MultiQC Report

WARNING: Fail Alignment Check

List of samples that failed the Bowtie2 minimum mapped reads threshold specified via the '--min_mapped_reads' parameter, and hence were ignored for the downstream processing steps.

Showing ⁴⁵/₄₅ rows.

Sample	Mapped reads
Ark_RSV_B400025_S289	36
Ark_RSV_B400026_S290	271
Ark_RSV_B400027_S291	520
Ark_RSV_B400029_S293	273
Ark_RSV_B400028_S292	421
Ark_RSV_B400046_S298	60
Ark_RSV_B400187_S370	162
Ark_RSV_BV00010_S4	732
Ark_RSV_BV00006_S3	585
Ark_RSV_BV00069_S13	605
Ark_RSV_BV00107_S19	616
Ark_RSV_BV00127_S21	807
Ark_RSV_BV00132_S22	884
Ark_RSV_BV00139_S23	740
Ark_RSV_BV00142_S25	827
Ark_RSV_BV00141_S24	801
Ark_RSV_BV00335_S52	573
Ark_RSV_BV00371_S59	720
Ark_RSV_BV00404_S64	812
Ark_RSV_BV00484_S74	2
Ark_RSV_BV00488_S76	643
Ark_RSV_BV00521_S79	596
Ark_RSV_BV00511_S78	826
Ark_RSV_BV00526_S80	893
Ark_RSV_BV00542_S83	833
Ark_RSV_BV00567_S86	251
Ark_RSV_BV00758_S108	741
Ark_RSV_BV00845_S119	142
Ark_RSV_BV00981_S137	359
Ark_RSV_BV01076_S146	795
Ark_RSV_BV01170_S157	96
Ark_RSV_BV01329_S164	650
Ark_RSV_BV01523_S180	860
Ark_RSV_BV01689_S186	176
Ark_RSV_BV01690_S187	66
Ark_RSV_BV01853_S192	396
Ark_RSV_BV01922_S195	389
Ark_RSV_BV01960_S198	787
Ark_RSV_BV02609_S202	398
Ark_RSV_BV02729_S207	394
Ark_RSV_BV02907_S228	614
Ark_RSV_BV02945_S232	620
Ark_RSV_BV03001_S245	250
Ark_RSV_BV03024_S252	619
Ark_RSV_BV03106_S267	78

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Sort	Visible	Group	Column	Description	ID	Scale
\|\|		Samples failed mapping read threshold	Mapped reads	Mapped reads	`Mapped reads`	None

Variant calling metrics

generated by the nf-core/viralrecon pipeline.

Showing ³⁸⁴/₃₈₄ rows and ¹⁵/₁₅ columns.

Sample	# Input reads	% Non-host reads (Kraken 2)	# Trimmed reads (fastp)	# Mapped reads	% Mapped reads	# Trimmed reads (iVar)	Coverage median	% Coverage > 1x	% Coverage > 10x	# SNPs	# INDELs	# Missense variants	# Ns per 100kb consensus	Pangolin lineage	Nextclade clade
Ark_RSV_B400003_S208	101342	99.53	61490	60448	98.31	58881	31.00	77.00	62.00	143	1	NA	NA	NA	NA
Ark_RSV_B400004_S209	240546	98.57	132610	128158	96.64	126866	130.00	90.00	82.00	217	3	NA	NA	NA	NA
Ark_RSV_B400005_S210	1391270	99.89	874446	870732	99.58	866478	842.00	95.00	89.00	231	3	NA	NA	NA	NA
Ark_RSV_B400007_S211	501264	99.89	246154	244865	99.48	243422	104.00	85.00	72.00	195	1	NA	NA	NA	NA
Ark_RSV_B400011_S281	828514	99.85	486198	481526	99.04	476559	430.00	92.00	89.00	226	3	NA	NA	NA	NA
Ark_RSV_B400012_S282	485444	99.55	288760	284561	98.55	282108	171.00	94.00	80.00	214	5	NA	NA	NA	NA
Ark_RSV_B400014_S283	463172	99.96	291904	290924	99.66	286895	158.00	87.00	75.00	191	3	NA	NA	NA	NA
Ark_RSV_B400016_S284	1115436	99.91	694076	686804	98.95	676926	580.00	93.00	87.00	230	2	NA	NA	NA	NA
Ark_RSV_B400020_S285	835866	99.94	551390	545752	98.98	539963	236.00	90.00	81.00	197	3	NA	NA	NA	NA
Ark_RSV_B400022_S286	362302	99.95	221088	220143	99.57	217599	138.00	90.00	77.00	203	2	NA	NA	NA	NA
Ark_RSV_B400023_S287	868008	99.93	481606	479609	99.59	476410	328.00	91.00	83.00	224	3	NA	NA	NA	NA
Ark_RSV_B400024_S288	642990	99.94	304796	304004	99.74	301784	102.00	87.00	73.00	191	1	NA	NA	NA	NA
Ark_RSV_B400025_S289	276670	99.14	158136	36	0.02	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400026_S290	856372	99.23	443264	271	0.06	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400027_S291	1228970	99.73	666272	520	0.08	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400028_S292	440166	98.89	207718	421	0.20	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400029_S293	1076646	99.85	566900	273	0.05	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400036_S294	2652552	99.96	1764674	1744000	98.83	1718389	1196.00	98.00	90.00	235	4	NA	NA	NA	NA
Ark_RSV_B400038_S295	237136	99.92	146634	145389	99.15	140373	30.00	81.00	64.00	134	2	NA	NA	NA	NA
Ark_RSV_B400041_S296	423332	99.60	239318	232757	97.26	228900	168.00	89.00	81.00	224	4	NA	NA	NA	NA
Ark_RSV_B400042_S297	993116	99.88	615156	611878	99.47	606536	680.00	97.00	89.00	175	3	NA	NA	NA	NA
Ark_RSV_B400046_S298	645434	99.64	357482	60	0.02	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400047_S299	582906	99.70	393454	388955	98.86	383233	155.00	90.00	81.00	192	2	NA	NA	NA	NA
Ark_RSV_B400048_S300	710170	99.60	448534	442219	98.59	434683	156.00	92.00	77.00	191	2	NA	NA	NA	NA
Ark_RSV_B400049_S301	908334	99.34	449878	423424	94.12	415827	257.00	90.00	81.00	218	4	NA	NA	NA	NA
Ark_RSV_B400050_S302	1557160	99.80	798048	742137	92.99	727944	264.00	95.00	84.00	227	5	NA	NA	NA	NA
Ark_RSV_B400051_S303	1626962	99.69	934254	901283	96.47	886891	599.00	94.00	85.00	214	3	NA	NA	NA	NA
Ark_RSV_B400052_S304	3151410	99.96	2054282	2015250	98.10	1973036	863.00	97.00	90.00	219	3	NA	NA	NA	NA
Ark_RSV_B400059_S305	531636	99.26	279398	272216	97.43	270902	126.00	91.00	82.00	220	6	NA	NA	NA	NA
Ark_RSV_B400060_S306	527062	99.41	336472	329302	97.87	326735	211.00	92.00	81.00	213	3	NA	NA	NA	NA
Ark_RSV_B400062_S307	861660	99.98	451224	30894	6.85	30569	NA	46.00	30.00	612	2	NA	NA	NA	NA
Ark_RSV_B400064_S308	512888	99.94	331412	328740	99.19	320732	77.00	90.00	75.00	180	2	NA	NA	NA	NA
Ark_RSV_B400066_S309	164938	98.41	75136	67564	89.92	65230	20.00	77.00	55.00	120	2	NA	NA	NA	NA
Ark_RSV_B400067_S310	332648	99.27	186168	177921	95.57	173970	139.00	90.00	83.00	219	3	NA	NA	NA	NA
Ark_RSV_B400068_S311	541140	99.86	309740	304459	98.30	299170	138.00	88.00	82.00	214	3	NA	NA	NA	NA
Ark_RSV_B400069_S312	448160	99.56	260494	256091	98.31	252325	138.00	87.00	80.00	160	4	NA	NA	NA	NA
Ark_RSV_B400073_S313	498970	99.54	323822	319743	98.74	317585	190.00	93.00	82.00	198	3	NA	NA	NA	NA
Ark_RSV_B400074_S314	323888	99.68	169426	166704	98.39	164867	66.00	88.00	76.00	194	3	NA	NA	NA	NA
Ark_RSV_B400076_S315	855924	99.85	530588	523903	98.74	515177	468.00	94.00	87.00	224	2	NA	NA	NA	NA
Ark_RSV_B400079_S316	275302	99.72	164470	160461	97.56	153421	62.00	87.00	73.00	172	3	NA	NA	NA	NA
Ark_RSV_B400083_S317	534850	99.97	276178	17888	6.48	17716	NA	46.00	24.00	478	1	NA	NA	NA	NA
Ark_RSV_B400084_S318	1053724	99.99	567884	43078	7.59	42613	3.00	60.00	35.00	667	5	NA	NA	NA	NA
Ark_RSV_B400087_S319	569488	99.94	370240	365919	98.83	355357	143.00	93.00	78.00	203	4	NA	NA	NA	NA
Ark_RSV_B400088_S320	753818	99.97	407276	33397	8.20	33154	2.00	59.00	35.00	687	3	NA	NA	NA	NA
Ark_RSV_B400091_S321	1414034	99.96	847554	844969	99.70	837631	758.00	96.00	88.00	226	2	NA	NA	NA	NA
Ark_RSV_B400094_S322	1027018	99.92	565758	560600	99.09	551755	416.00	96.00	87.00	217	3	NA	NA	NA	NA
Ark_RSV_B400095_S323	525584	99.96	300208	299188	99.66	294410	168.00	87.00	79.00	201	3	NA	NA	NA	NA
Ark_RSV_B400096_S324	652944	99.96	394318	393206	99.72	389116	183.00	90.00	82.00	223	3	NA	NA	NA	NA
Ark_RSV_B400099_S325	562356	99.86	358148	354908	99.10	351502	306.00	93.00	86.00	220	4	NA	NA	NA	NA
Ark_RSV_B400100_S326	962810	99.74	483988	445246	92.00	434474	222.00	89.00	81.00	205	3	NA	NA	NA	NA
Ark_RSV_B400104_S327	466866	99.76	212884	6636	3.12	6444	1.00	52.00	26.00	459	3	NA	NA	NA	NA
Ark_RSV_B400105_S328	441876	99.97	222282	13597	6.12	13377	NA	46.00	28.00	561	4	NA	NA	NA	NA
Ark_RSV_B400106_S329	523034	98.06	184374	143785	77.99	141217	96.00	89.00	78.00	219	3	NA	NA	NA	NA
Ark_RSV_B400107_S330	1525008	99.72	922662	892631	96.75	881773	511.00	95.00	87.00	215	3	NA	NA	NA	NA
Ark_RSV_B400111_S331	456364	95.61	106918	61543	57.56	58659	56.00	89.00	77.00	215	3	NA	NA	NA	NA
Ark_RSV_B400116_S332	438180	99.67	269628	265774	98.57	260841	120.00	97.00	85.00	41	2	NA	NA	NA	NA
Ark_RSV_B400117_S333	237354	97.18	34010	15220	44.75	14231	12.00	74.00	55.00	187	2	NA	NA	NA	NA
Ark_RSV_B400118_S334	664936	99.95	402102	393958	97.97	386534	167.00	97.00	87.00	78	2	NA	NA	NA	NA
Ark_RSV_B400119_S335	409522	98.24	174046	142714	82.00	139712	106.00	94.00	84.00	38	2	NA	NA	NA	NA
Ark_RSV_B400120_S336	685222	99.48	390130	374539	96.00	368920	268.00	94.00	90.00	32	2	NA	NA	NA	NA
Ark_RSV_B400125_S337	360114	99.28	211150	206023	97.57	204363	93.00	89.00	75.00	197	3	NA	NA	NA	NA
Ark_RSV_B400126_S338	609178	99.11	292396	270362	92.46	267280	181.00	86.00	79.00	204	3	NA	NA	NA	NA
Ark_RSV_B400129_S339	388338	99.21	249302	244780	98.19	243117	123.00	91.00	81.00	208	4	NA	NA	NA	NA
Ark_RSV_B400130_S340	1028958	99.64	647144	625310	96.63	620081	341.00	93.00	87.00	223	4	NA	NA	NA	NA
Ark_RSV_B400131_S341	463824	99.79	289308	286778	99.13	282238	146.00	95.00	85.00	39	2	NA	NA	NA	NA
Ark_RSV_B400132_S342	1215946	99.89	590584	36485	6.18	35745	4.00	60.00	43.00	777	5	NA	NA	NA	NA
Ark_RSV_B400133_S343	1501826	99.95	1012570	1007215	99.47	997029	377.00	95.00	86.00	213	4	NA	NA	NA	NA
Ark_RSV_B400134_S344	699210	99.93	373806	371293	99.33	368341	229.00	88.00	79.00	207	2	NA	NA	NA	NA
Ark_RSV_B400135_S345	532884	99.76	296808	292492	98.55	285493	178.00	88.00	80.00	194	4	NA	NA	NA	NA
Ark_RSV_B400136_S346	978352	99.94	644224	640253	99.38	635797	233.00	92.00	83.00	208	4	NA	NA	NA	NA
Ark_RSV_B400137_S347	970530	99.30	547242	525923	96.10	516962	414.00	98.00	92.00	43	2	NA	NA	NA	NA
Ark_RSV_B400138_S348	1173936	99.63	564132	44808	7.94	43804	8.00	67.00	46.00	888	6	NA	NA	NA	NA
Ark_RSV_B400145_S349	476094	99.97	320180	318873	99.59	310102	104.00	89.00	73.00	159	3	NA	NA	NA	NA
Ark_RSV_B400146_S350	595232	99.91	351598	347231	98.76	342533	319.00	92.00	86.00	233	2	NA	NA	NA	NA
Ark_RSV_B400147_S351	462104	99.98	292660	291994	99.77	282306	77.00	92.00	75.00	32	3	NA	NA	NA	NA
Ark_RSV_B400148_S352	576204	99.60	340956	326232	95.68	323092	94.00	90.00	76.00	178	4	NA	NA	NA	NA
Ark_RSV_B400149_S353	481946	98.36	160230	121331	75.72	117578	48.00	87.00	72.00	189	3	NA	NA	NA	NA
Ark_RSV_B400156_S354	982898	99.77	508610	484583	95.28	479993	313.00	92.00	85.00	217	2	NA	NA	NA	NA
Ark_RSV_B400157_S355	503088	99.94	268268	26379	9.83	26028	2.00	54.00	35.00	713	5	NA	NA	NA	NA
Ark_RSV_B400158_S356	271096	99.86	167170	165595	99.06	161820	80.00	85.00	73.00	190	3	NA	NA	NA	NA
Ark_RSV_B400160_S357	384376	99.26	62364	18419	29.53	16808	12.00	72.00	52.00	164	3	NA	NA	NA	NA
Ark_RSV_B400161_S358	1398500	99.84	669142	43545	6.51	42440	6.00	66.00	47.00	886	7	NA	NA	NA	NA
Ark_RSV_B400162_S359	468376	98.31	208384	178405	85.61	174538	140.00	95.00	85.00	34	3	NA	NA	NA	NA
Ark_RSV_B400163_S360	210592	88.04	29326	1302	4.44	722	NA	40.00	10.00	31	1	NA	NA	NA	NA
Ark_RSV_B400169_S361	592190	99.97	319222	22493	7.05	22244	2.00	56.00	38.00	777	4	NA	NA	NA	NA
Ark_RSV_B400170_S362	862926	99.95	550850	544233	98.80	533982	356.00	98.00	92.00	44	3	NA	NA	NA	NA
Ark_RSV_B400171_S363	155570	99.64	81854	79246	96.81	72888	22.00	84.00	65.00	58	1	NA	NA	NA	NA
Ark_RSV_B400174_S364	300560	99.53	168164	164057	97.56	161594	113.00	89.00	80.00	208	2	NA	NA	NA	NA
Ark_RSV_B400178_S365	601378	99.81	364712	358977	98.43	350834	198.00	95.00	85.00	37	1	NA	NA	NA	NA
Ark_RSV_B400179_S366	1480216	99.62	796222	746843	93.80	734475	699.00	94.00	88.00	248	3	NA	NA	NA	NA
Ark_RSV_B400182_S367	251074	99.30	126586	119549	94.44	116711	56.00	84.00	70.00	187	3	NA	NA	NA	NA
Ark_RSV_B400185_S368	438448	99.95	262558	261800	99.71	256500	64.00	82.00	69.00	182	3	NA	NA	NA	NA
Ark_RSV_B400186_S369	149938	97.92	62512	55060	88.08	54051	36.00	84.00	68.00	199	NA	NA	NA	NA	NA
Ark_RSV_B400187_S370	23548	98.60	4424	162	3.66	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400188_S371	484706	98.05	112792	65848	58.38	62988	36.00	88.00	71.00	43	2	NA	NA	NA	NA
Ark_RSV_B400191_S372	395018	97.67	56598	2159	3.81	1091	NA	37.00	15.00	65	1	NA	NA	NA	NA
Ark_RSV_B400193_S373	952180	99.51	381056	317152	83.23	307403	203.00	92.00	84.00	233	4	NA	NA	NA	NA
Ark_RSV_B400198_S374	99268	99.75	50884	49619	97.51	43981	6.00	70.00	41.00	16	2	NA	NA	NA	NA
Ark_RSV_B400200_S375	373992	99.73	232322	227531	97.94	223582	104.00	90.00	74.00	199	1	NA	NA	NA	NA
Ark_RSV_B400202_S376	447118	99.98	284802	283714	99.62	277924	130.00	93.00	80.00	39	3	NA	NA	NA	NA
Ark_RSV_B400203_S377	211404	92.91	33338	9348	28.04	8642	8.00	73.00	45.00	153	3	NA	NA	NA	NA
Ark_RSV_B400204_S378	1478724	99.79	883274	878205	99.43	869680	413.00	93.00	84.00	210	4	NA	NA	NA	NA
Ark_RSV_B400218_S379	221150	95.34	29194	3311	11.34	2797	NA	48.00	21.00	22	NA	NA	NA	NA	NA
Ark_RSV_B400221_S380	836164	99.73	386580	358208	92.66	341908	109.00	94.00	84.00	36	3	NA	NA	NA	NA
Ark_RSV_B400223_S381	97610	97.83	13536	2418	17.86	2125	NA	44.00	22.00	8	1	NA	NA	NA	NA
Ark_RSV_B400225_S382	1445504	99.88	722706	689401	95.39	672383	469.00	93.00	86.00	213	3	NA	NA	NA	NA
Ark_RSV_B400226_S383	119390	97.03	43348	37100	85.59	36296	25.00	86.00	65.00	26	2	NA	NA	NA	NA
Ark_RSV_B400233_S384	114886	99.50	7548	4886	64.73	4326	2.00	54.00	23.00	56	2	NA	NA	NA	NA
Ark_RSV_BV00001_S1	292026	80.45	49556	11914	24.04	11278	6.00	67.00	45.00	123	3	NA	NA	NA	NA
Ark_RSV_BV00002_S2	1259578	98.38	722656	677149	93.70	672305	305.00	91.00	85.00	211	4	NA	NA	NA	NA
Ark_RSV_BV00006_S3	163890	91.24	26964	585	2.17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00010_S4	208922	80.50	35120	732	2.08	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00020_S5	51374	74.54	9340	1802	19.29	1714	NA	36.00	13.00	41	1	NA	NA	NA	NA
Ark_RSV_BV00022_S6	1499352	99.90	890404	884907	99.38	879609	364.00	95.00	84.00	217	3	NA	NA	NA	NA
Ark_RSV_BV00023_S7	620740	99.96	368240	367080	99.68	353326	96.00	90.00	75.00	39	2	NA	NA	NA	NA
Ark_RSV_BV00025_S8	626578	99.36	386216	375833	97.31	371683	328.00	98.00	92.00	49	2	NA	NA	NA	NA
Ark_RSV_BV00026_S9	296284	97.33	75198	57544	76.52	56196	42.00	82.00	72.00	189	4	NA	NA	NA	NA
Ark_RSV_BV00037_S10	422232	96.69	199850	167448	83.79	165610	122.00	95.00	85.00	44	2	NA	NA	NA	NA
Ark_RSV_BV00038_S11	57836	81.23	12946	5613	43.36	5471	3.00	64.00	30.00	74	2	NA	NA	NA	NA
Ark_RSV_BV00040_S12	183014	95.01	84026	72758	86.59	72016	33.00	82.00	66.00	163	4	NA	NA	NA	NA
Ark_RSV_BV00069_S13	126254	84.80	24052	605	2.52	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00080_S14	322616	99.67	197048	194759	98.84	190723	87.00	91.00	75.00	92	3	NA	NA	NA	NA
Ark_RSV_BV00081_S15	739470	99.96	393890	391320	99.35	385170	72.00	87.00	72.00	191	2	NA	NA	NA	NA
Ark_RSV_BV00083_S16	73350	86.81	11098	1736	15.64	1538	NA	41.00	16.00	35	NA	NA	NA	NA	NA
Ark_RSV_BV00086_S17	211846	99.23	120524	118166	98.04	115540	66.00	87.00	72.00	35	2	NA	NA	NA	NA
Ark_RSV_BV00088_S18	588256	99.17	334732	324521	96.95	321270	264.00	92.00	83.00	157	3	NA	NA	NA	NA
Ark_RSV_BV00107_S19	135296	71.62	23196	616	2.66	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00125_S20	99752	80.08	21724	7307	33.64	7038	2.00	60.00	32.00	73	NA	NA	NA	NA	NA
Ark_RSV_BV00127_S21	229756	89.26	40590	807	1.99	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00132_S22	314930	80.66	43644	884	2.03	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00139_S23	226218	80.58	36360	740	2.04	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00141_S24	207152	83.24	38622	801	2.07	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00142_S25	248180	67.02	44542	827	1.86	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00143_S26	1093154	99.74	716180	710474	99.20	708030	406.00	91.00	83.00	233	3	NA	NA	NA	NA
Ark_RSV_BV00148_S27	359182	89.38	52496	1090	2.08	116	NA	4.00	1.00	4	NA	NA	NA	NA	NA
Ark_RSV_BV00150_S28	748740	99.68	479800	471983	98.37	468673	286.00	92.00	82.00	201	5	NA	NA	NA	NA
Ark_RSV_BV00157_S29	425860	99.89	246898	243744	98.72	241164	85.00	91.00	75.00	193	5	NA	NA	NA	NA
Ark_RSV_BV00190_S30	395346	83.28	43218	1624	3.76	831	NA	35.00	11.00	27	1	NA	NA	NA	NA
Ark_RSV_BV00194_S31	855294	99.27	430390	395772	91.96	390515	303.00	96.00	91.00	47	2	NA	NA	NA	NA
Ark_RSV_BV00195_S32	882874	99.27	456292	444288	97.37	441534	323.00	90.00	83.00	208	4	NA	NA	NA	NA
Ark_RSV_BV00211_S33	528510	99.87	323558	312325	96.53	311004	170.00	90.00	82.00	214	4	NA	NA	NA	NA
Ark_RSV_BV00212_S34	340552	98.44	196900	189111	96.04	188082	143.00	93.00	81.00	95	3	NA	NA	NA	NA
Ark_RSV_BV00213_S35	221608	84.86	39886	13820	34.65	13349	14.00	77.00	57.00	78	3	NA	NA	NA	NA
Ark_RSV_BV00215_S36	226298	91.18	40342	16675	41.33	16160	9.00	70.00	49.00	127	1	NA	NA	NA	NA
Ark_RSV_BV00216_S37	815782	99.60	470026	452198	96.21	447516	197.00	90.00	81.00	219	4	NA	NA	NA	NA
Ark_RSV_BV00223_S38	683500	99.89	451566	449926	99.64	446680	207.00	91.00	84.00	213	4	NA	NA	NA	NA
Ark_RSV_BV00226_S39	358390	97.31	92448	57589	62.29	56132	42.00	87.00	69.00	29	2	NA	NA	NA	NA
Ark_RSV_BV00247_S40	238374	99.95	146368	145897	99.68	141268	32.00	85.00	65.00	31	2	NA	NA	NA	NA
Ark_RSV_BV00263_S41	419304	99.90	192266	191154	99.42	189478	100.00	89.00	81.00	207	3	NA	NA	NA	NA
Ark_RSV_BV00267_S42	242730	89.76	51140	21604	42.24	20853	17.00	82.00	61.00	37	2	NA	NA	NA	NA
Ark_RSV_BV00268_S43	563652	99.75	347312	345863	99.58	342438	205.00	96.00	89.00	50	2	NA	NA	NA	NA
Ark_RSV_BV00271_S44	706346	99.99	379570	33372	8.79	33177	1.00	51.00	29.00	585	2	NA	NA	NA	NA
Ark_RSV_BV00287_S45	555412	99.12	308472	299332	97.04	296503	328.00	94.00	84.00	165	3	NA	NA	NA	NA
Ark_RSV_BV00288_S46	1295140	99.55	744240	691131	92.86	685316	454.00	95.00	90.00	105	3	NA	NA	NA	NA
Ark_RSV_BV00290_S47	151984	87.06	34368	1216	3.54	481	NA	23.00	7.00	18	NA	NA	NA	NA	NA
Ark_RSV_BV00301_S48	76252	71.90	17262	3829	22.18	3579	2.00	55.00	32.00	71	2	NA	NA	NA	NA
Ark_RSV_BV00305_S49	663330	99.75	397248	393836	99.14	392403	384.00	98.00	90.00	108	2	NA	NA	NA	NA
Ark_RSV_BV00310_S50	603332	98.98	310834	299370	96.31	297790	162.00	86.00	80.00	214	3	NA	NA	NA	NA
Ark_RSV_BV00311_S51	192504	89.65	38662	16121	41.70	15599	8.00	71.00	46.00	129	3	NA	NA	NA	NA
Ark_RSV_BV00335_S52	204018	95.60	23024	573	2.49	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00339_S53	127430	99.95	73492	73392	99.86	68940	9.00	75.00	49.00	26	2	NA	NA	NA	NA
Ark_RSV_BV00343_S54	344638	88.72	45426	4292	9.45	3192	1.00	50.00	23.00	76	2	NA	NA	NA	NA
Ark_RSV_BV00356_S55	329800	98.90	183528	179658	97.89	179008	86.00	87.00	76.00	190	4	NA	NA	NA	NA
Ark_RSV_BV00358_S56	983976	99.47	501604	476570	95.01	471448	367.00	97.00	90.00	47	2	NA	NA	NA	NA
Ark_RSV_BV00362_S57	982676	98.96	513446	493422	96.10	491646	302.00	92.00	84.00	205	4	NA	NA	NA	NA
Ark_RSV_BV00367_S58	204268	99.69	124194	123131	99.14	121269	74.00	92.00	76.00	41	2	NA	NA	NA	NA
Ark_RSV_BV00371_S59	197382	82.43	30518	720	2.36	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00378_S60	693000	99.75	435674	432551	99.28	427976	301.00	97.00	91.00	46	2	NA	NA	NA	NA
Ark_RSV_BV00382_S61	191636	74.06	33448	1598	4.78	1042	NA	27.00	9.00	12	1	NA	NA	NA	NA
Ark_RSV_BV00387_S62	412516	99.93	267694	266442	99.53	262328	150.00	96.00	82.00	39	2	NA	NA	NA	NA
Ark_RSV_BV00400_S63	216234	79.37	37022	1054	2.85	400	NA	23.00	7.00	25	NA	NA	NA	NA	NA
Ark_RSV_BV00404_S64	212928	48.55	50912	812	1.59	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00422_S65	214844	98.45	66734	1153	1.73	854	NA	32.00	11.00	37	1	NA	NA	NA	NA
Ark_RSV_BV00436_S66	517512	99.78	310444	308195	99.28	305569	339.00	92.00	82.00	166	3	NA	NA	NA	NA
Ark_RSV_BV00438_S67	569308	99.73	340622	330904	97.15	329110	215.00	91.00	85.00	214	2	NA	NA	NA	NA
Ark_RSV_BV00439_S68	887754	99.87	500666	489344	97.74	485387	417.00	94.00	86.00	221	3	NA	NA	NA	NA
Ark_RSV_BV00455_S69	721816	99.93	442110	440444	99.62	434941	252.00	96.00	86.00	31	2	NA	NA	NA	NA
Ark_RSV_BV00470_S70	736570	99.98	482974	482147	99.83	473992	281.00	98.00	86.00	30	2	NA	NA	NA	NA
Ark_RSV_BV00476_S71	540054	99.88	312476	309728	99.12	307615	211.00	87.00	79.00	199	3	NA	NA	NA	NA
Ark_RSV_BV00478_S72	165292	92.89	21304	4698	22.05	4217	2.00	57.00	28.00	12	2	NA	NA	NA	NA
Ark_RSV_BV00482_S73	327428	99.89	208854	206787	99.01	204254	158.00	95.00	87.00	37	4	NA	NA	NA	NA
Ark_RSV_BV00484_S74	4	100.00	2	2	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00487_S75	304912	99.69	82958	69235	83.46	68182	72.00	90.00	76.00	96	3	NA	NA	NA	NA
Ark_RSV_BV00488_S76	250718	92.75	21522	643	2.99	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00500_S77	174918	90.29	15914	2286	14.36	1953	2.00	55.00	27.00	55	2	NA	NA	NA	NA
Ark_RSV_BV00511_S78	245624	83.99	25752	826	3.21	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00521_S79	840924	98.74	458036	596	0.13	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00526_S80	264112	98.39	27694	893	3.22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00538_S81	191164	85.43	24262	1242	5.12	768	NA	24.00	10.00	12	NA	NA	NA	NA	NA
Ark_RSV_BV00539_S82	174060	98.48	59402	49024	82.53	48447	36.00	89.00	69.00	37	3	NA	NA	NA	NA
Ark_RSV_BV00542_S83	157216	78.50	19616	833	4.25	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00553_S84	182270	84.86	24526	1239	5.05	783	NA	36.00	12.00	37	1	NA	NA	NA	NA
Ark_RSV_BV00557_S85	153482	88.76	19538	1686	8.63	1141	NA	30.00	9.00	10	1	NA	NA	NA	NA
Ark_RSV_BV00567_S86	338528	99.50	180092	251	0.14	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00580_S87	492542	99.92	302596	301730	99.71	297338	178.00	92.00	79.00	147	3	NA	NA	NA	NA
Ark_RSV_BV00596_S88	216440	96.88	78852	63007	79.91	62247	44.00	86.00	70.00	130	3	NA	NA	NA	NA
Ark_RSV_BV00600_S89	831888	99.98	445764	57217	12.84	56757	4.00	61.00	44.00	892	5	NA	NA	NA	NA
Ark_RSV_BV00601_S90	243992	93.34	50342	27999	55.62	27431	18.00	83.00	63.00	84	3	NA	NA	NA	NA
Ark_RSV_BV00639_S91	279652	96.76	96250	78558	81.62	77789	50.00	86.00	71.00	183	4	NA	NA	NA	NA
Ark_RSV_BV00642_S92	1096058	99.71	608294	589166	96.86	585323	607.00	97.00	92.00	108	3	NA	NA	NA	NA
Ark_RSV_BV00648_S93	299600	99.10	115150	96544	83.84	95228	51.00	81.00	69.00	173	2	NA	NA	NA	NA
Ark_RSV_BV00653_S94	155646	99.72	87696	86085	98.16	84871	70.00	92.00	75.00	40	2	NA	NA	NA	NA
Ark_RSV_BV00654_S95	493008	99.93	293894	291665	99.24	289977	231.00	90.00	83.00	212	3	NA	NA	NA	NA
Ark_RSV_BV00658_S96	228188	99.80	116798	7293	6.24	7251	NA	43.00	26.00	528	1	NA	NA	NA	NA
Ark_RSV_BV00670_S97	362348	99.78	76506	55913	73.08	54346	46.00	86.00	70.00	197	4	NA	NA	NA	NA
Ark_RSV_BV00678_S98	249016	96.80	41146	27673	67.26	27065	16.00	76.00	56.00	75	2	NA	NA	NA	NA
Ark_RSV_BV00679_S99	467168	99.77	265270	260521	98.21	257320	100.00	86.00	76.00	169	4	NA	NA	NA	NA
Ark_RSV_BV00682_S100	240168	99.20	68892	51749	75.12	50941	23.00	78.00	60.00	152	3	NA	NA	NA	NA
Ark_RSV_BV00684_S101	549910	99.81	274712	264471	96.27	259547	169.00	92.00	81.00	104	3	NA	NA	NA	NA
Ark_RSV_BV00688_S102	709884	99.96	443022	439265	99.15	429829	190.00	94.00	86.00	24	2	NA	NA	NA	NA
Ark_RSV_BV00697_S103	3285352	99.97	1756886	239754	13.65	237823	8.00	66.00	48.00	1034	10	NA	NA	NA	NA
Ark_RSV_BV00713_S104	165990	98.39	64394	60025	93.22	58525	40.00	88.00	69.00	26	1	NA	NA	NA	NA
Ark_RSV_BV00726_S105	1163946	99.91	715322	713120	99.69	704434	358.00	98.00	89.00	36	2	NA	NA	NA	NA
Ark_RSV_BV00743_S106	615360	99.79	337730	334979	99.19	333362	211.00	90.00	79.00	203	3	NA	NA	NA	NA
Ark_RSV_BV00749_S107	310794	99.41	183546	180279	98.22	177399	181.00	90.00	80.00	164	3	NA	NA	NA	NA
Ark_RSV_BV00758_S108	251228	89.38	35230	741	2.10	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00760_S109	484692	99.85	279660	275527	98.52	271945	184.00	94.00	82.00	102	3	NA	NA	NA	NA
Ark_RSV_BV00766_S110	698144	99.96	413468	411911	99.62	404615	243.00	93.00	78.00	197	2	NA	NA	NA	NA
Ark_RSV_BV00768_S111	1561946	99.85	855914	833504	97.38	823729	857.00	95.00	90.00	194	3	NA	NA	NA	NA
Ark_RSV_BV00772_S112	387916	99.42	254700	251226	98.64	248767	70.00	86.00	77.00	186	2	NA	NA	NA	NA
Ark_RSV_BV00773_S113	1065166	99.68	570652	568981	99.71	563063	146.00	87.00	77.00	188	4	NA	NA	NA	NA
Ark_RSV_BV00780_S114	505362	99.86	320298	318423	99.41	315771	227.00	95.00	81.00	104	2	NA	NA	NA	NA
Ark_RSV_BV00797_S115	755672	99.65	448202	441101	98.42	433830	222.00	93.00	87.00	30	2	NA	NA	NA	NA
Ark_RSV_BV00809_S116	1073790	99.71	508732	439944	86.48	433122	333.00	94.00	82.00	221	5	NA	NA	NA	NA
Ark_RSV_BV00818_S117	607250	99.97	356178	354562	99.55	347895	159.00	91.00	78.00	101	3	NA	NA	NA	NA
Ark_RSV_BV00823_S118	906684	99.89	542132	538686	99.36	530908	313.00	95.00	89.00	53	2	NA	NA	NA	NA
Ark_RSV_BV00845_S119	66958	60.76	10464	142	1.36	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00847_S120	28998	92.98	7008	5114	72.97	4904	2.00	56.00	31.00	17	1	NA	NA	NA	NA
Ark_RSV_BV00855_S121	882866	99.74	473356	468783	99.03	466909	258.00	92.00	83.00	207	4	NA	NA	NA	NA
Ark_RSV_BV00857_S122	1263298	99.86	812310	808367	99.51	802976	544.00	98.00	93.00	37	1	NA	NA	NA	NA
Ark_RSV_BV00875_S123	1215732	99.34	559848	503302	89.90	497570	380.00	91.00	82.00	210	3	NA	NA	NA	NA
Ark_RSV_BV00888_S124	258610	98.48	114964	101321	88.13	99262	75.00	91.00	75.00	26	2	NA	NA	NA	NA
Ark_RSV_BV00896_S125	316878	98.41	37862	3940	10.41	3212	2.00	55.00	27.00	86	2	NA	NA	NA	NA
Ark_RSV_BV00901_S126	128534	99.16	69428	66980	96.47	65874	19.00	76.00	56.00	132	3	NA	NA	NA	NA
Ark_RSV_BV00906_S127	504746	97.87	169864	143388	84.41	140841	126.00	96.00	83.00	30	2	NA	NA	NA	NA
Ark_RSV_BV00920_S128	1018584	99.95	509084	39133	7.69	38761	3.00	58.00	41.00	803	5	NA	NA	NA	NA
Ark_RSV_BV00927_S129	479684	99.56	282416	278311	98.55	275995	279.00	90.00	83.00	161	3	NA	NA	NA	NA
Ark_RSV_BV00930_S130	833270	99.99	372030	28917	7.77	28747	NA	48.00	29.00	597	5	NA	NA	NA	NA
Ark_RSV_BV00936_S131	317878	85.68	61334	20642	33.66	19719	12.00	77.00	55.00	37	2	NA	NA	NA	NA
Ark_RSV_BV00939_S132	292856	98.22	42898	2133	4.97	1210	NA	41.00	14.00	8	NA	NA	NA	NA	NA
Ark_RSV_BV00940_S133	339722	96.81	141712	122949	86.76	121751	102.00	88.00	81.00	205	3	NA	NA	NA	NA
Ark_RSV_BV00951_S134	479608	98.99	271654	263174	96.88	260828	147.00	95.00	89.00	31	2	NA	NA	NA	NA
Ark_RSV_BV00976_S135	216136	99.49	132686	130593	98.42	127578	50.00	80.00	65.00	154	1	NA	NA	NA	NA
Ark_RSV_BV00980_S136	395892	96.22	112828	71764	63.60	70290	64.00	91.00	76.00	65	3	NA	NA	NA	NA
Ark_RSV_BV00981_S137	183474	71.63	22768	359	1.58	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00999_S138	1028190	99.85	609600	604580	99.18	600487	483.00	89.00	83.00	216	4	NA	NA	NA	NA
Ark_RSV_BV01000_S139	466110	99.76	234420	212839	90.79	211474	113.00	88.00	78.00	196	3	NA	NA	NA	NA
Ark_RSV_BV01006_S140	1072604	99.93	634192	620536	97.85	616721	494.00	100.00	94.00	31	2	NA	NA	NA	NA
Ark_RSV_BV01008_S141	298000	99.96	182996	181837	99.37	175997	60.00	89.00	75.00	28	2	NA	NA	NA	NA
Ark_RSV_BV01022_S142	446538	99.96	239182	25256	10.56	25131	2.00	55.00	32.00	667	5	NA	NA	NA	NA
Ark_RSV_BV01049_S143	957856	99.51	519814	487519	93.79	482079	431.00	98.00	93.00	32	2	NA	NA	NA	NA
Ark_RSV_BV01067_S144	562290	99.97	342454	341705	99.78	332981	160.00	92.00	82.00	25	2	NA	NA	NA	NA
Ark_RSV_BV01068_S145	2141198	99.85	1364522	1347346	98.74	1337484	1521.00	98.00	91.00	184	3	NA	NA	NA	NA
Ark_RSV_BV01076_S146	120456	93.12	17726	795	4.48	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01083_S147	481756	99.75	254124	28571	11.24	28380	2.00	53.00	36.00	755	3	NA	NA	NA	NA
Ark_RSV_BV01088_S148	1200482	99.94	627618	34844	5.55	34518	4.00	56.00	40.00	846	5	NA	NA	NA	NA
Ark_RSV_BV01094_S149	2247524	99.97	1368606	1353751	98.91	1338789	529.00	98.00	94.00	39	2	NA	NA	NA	NA
Ark_RSV_BV01097_S150	136420	96.57	27024	2385	8.83	2154	NA	33.00	17.00	329	3	NA	NA	NA	NA
Ark_RSV_BV01100_S151	634856	99.45	327258	312214	95.40	308653	205.00	96.00	88.00	25	2	NA	NA	NA	NA
Ark_RSV_BV01102_S152	118084	97.52	14378	2270	15.79	1758	NA	29.00	12.00	13	1	NA	NA	NA	NA
Ark_RSV_BV01116_S153	391420	99.70	225318	223108	99.02	221272	137.00	88.00	77.00	204	3	NA	NA	NA	NA
Ark_RSV_BV01130_S154	1177110	99.74	676642	661712	97.79	654852	396.00	97.00	91.00	28	3	NA	NA	NA	NA
Ark_RSV_BV01145_S155	729924	99.98	492488	491406	99.78	485648	185.00	91.00	77.00	200	3	NA	NA	NA	NA
Ark_RSV_BV01165_S156	312486	98.62	149592	133389	89.17	132248	93.00	92.00	83.00	32	2	NA	NA	NA	NA
Ark_RSV_BV01170_S157	28308	90.83	3120	96	3.08	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01175_S158	308842	99.35	180776	176736	97.77	175202	112.00	95.00	85.00	39	2	NA	NA	NA	NA
Ark_RSV_BV01195_S159	486544	99.51	210710	179427	85.15	177167	106.00	94.00	79.00	31	2	NA	NA	NA	NA
Ark_RSV_BV01216_S160	409150	99.94	265612	264130	99.44	261912	139.00	88.00	77.00	195	4	NA	NA	NA	NA
Ark_RSV_BV01218_S161	707538	99.59	331830	309584	93.30	306451	199.00	97.00	91.00	32	2	NA	NA	NA	NA
Ark_RSV_BV01235_S162	1277082	99.95	655500	63913	9.75	63458	4.00	61.00	43.00	916	6	NA	NA	NA	NA
Ark_RSV_BV01247_S163	581290	99.65	358134	352010	98.29	349896	251.00	94.00	89.00	41	2	NA	NA	NA	NA
Ark_RSV_BV01329_S164	177908	85.86	25908	650	2.51	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01355_S165	1045350	97.58	644868	641768	99.52	635099	278.00	96.00	88.00	36	2	NA	NA	NA	NA
Ark_RSV_BV01359_S166	128840	99.57	72010	70390	97.75	69239	51.00	81.00	70.00	133	3	NA	NA	NA	NA
Ark_RSV_BV01402_S167	257484	88.49	40926	15940	38.95	15422	6.00	65.00	45.00	97	4	NA	NA	NA	NA
Ark_RSV_BV01406_S168	521032	99.76	305278	302099	98.96	299878	297.00	91.00	83.00	212	3	NA	NA	NA	NA
Ark_RSV_BV01408_S169	386090	97.79	218274	207606	95.11	205799	193.00	97.00	87.00	31	2	NA	NA	NA	NA
Ark_RSV_BV01413_S170	1585664	99.89	829600	91911	11.08	91359	6.00	64.00	46.00	968	7	NA	NA	NA	NA
Ark_RSV_BV01416_S171	410508	98.56	236326	226964	96.04	225542	149.00	91.00	78.00	156	3	NA	NA	NA	NA
Ark_RSV_BV01418_S172	1291088	99.81	781560	760308	97.28	752223	591.00	98.00	94.00	37	2	NA	NA	NA	NA
Ark_RSV_BV01428_S173	459664	99.56	288946	285165	98.69	282310	112.00	92.00	77.00	191	4	NA	NA	NA	NA
Ark_RSV_BV01430_S174	435158	98.20	152188	122620	80.57	121000	152.00	92.00	78.00	193	5	NA	NA	NA	NA
Ark_RSV_BV01431_S175	609162	99.69	317946	316660	99.60	315067	121.00	90.00	78.00	196	4	NA	NA	NA	NA
Ark_RSV_BV01443_S176	432480	99.26	233702	228130	97.62	225440	218.00	93.00	80.00	167	3	NA	NA	NA	NA
Ark_RSV_BV01467_S177	1092258	99.94	541960	36960	6.82	36511	1.00	52.00	39.00	788	3	NA	NA	NA	NA
Ark_RSV_BV01486_S178	1493276	99.87	834874	811718	97.23	802757	543.00	93.00	86.00	204	4	NA	NA	NA	NA
Ark_RSV_BV01515_S179	292864	99.03	43174	5340	12.37	4503	2.00	62.00	28.00	18	2	NA	NA	NA	NA
Ark_RSV_BV01523_S180	275652	96.33	35274	860	2.44	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01525_S181	533494	99.91	332226	327124	98.46	324168	261.00	89.00	79.00	201	4	NA	NA	NA	NA
Ark_RSV_BV01569_S182	690194	99.58	310242	278557	89.79	272845	117.00	96.00	83.00	35	3	NA	NA	NA	NA
Ark_RSV_BV01606_S183	798114	99.99	427810	38703	9.05	38441	NA	48.00	30.00	603	3	NA	NA	NA	NA
Ark_RSV_BV01609_S184	355970	99.90	170252	16487	9.68	16284	NA	47.00	30.00	610	3	NA	NA	NA	NA
Ark_RSV_BV01688_S185	375824	99.94	229756	228558	99.48	224511	144.00	94.00	84.00	21	3	NA	NA	NA	NA
Ark_RSV_BV01689_S186	6006	100.00	2722	176	6.47	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01690_S187	41618	68.81	3790	66	1.74	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01766_S188	1019136	99.94	666500	662433	99.39	656449	303.00	92.00	86.00	217	4	NA	NA	NA	NA
Ark_RSV_BV01767_S189	1111138	99.64	516166	29546	5.72	28614	2.00	53.00	37.00	727	6	NA	NA	NA	NA
Ark_RSV_BV01768_S190	72306	92.99	17822	12494	70.10	12279	6.00	71.00	46.00	110	NA	NA	NA	NA	NA
Ark_RSV_BV01852_S191	698942	99.98	415164	414101	99.74	404656	167.00	94.00	83.00	43	2	NA	NA	NA	NA
Ark_RSV_BV01853_S192	35376	71.66	3818	396	10.37	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01854_S193	649560	98.47	181350	14124	7.79	13564	NA	45.00	29.00	580	4	NA	NA	NA	NA
Ark_RSV_BV01919_S194	1701368	99.84	1051824	1043540	99.21	1031811	590.00	97.00	88.00	208	5	NA	NA	NA	NA
Ark_RSV_BV01922_S195	188570	76.15	20678	389	1.88	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01950_S196	134398	78.56	18498	1699	9.18	1304	NA	40.00	15.00	63	1	NA	NA	NA	NA
Ark_RSV_BV01958_S197	378068	99.59	188088	173952	92.48	168955	115.00	95.00	81.00	32	2	NA	NA	NA	NA
Ark_RSV_BV01960_S198	232362	93.26	32544	787	2.42	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02099_S199	1788628	99.97	941970	98693	10.48	97936	4.00	64.00	45.00	940	4	NA	NA	NA	NA
Ark_RSV_BV02196_S200	1684068	99.96	898394	72244	8.04	71681	3.00	59.00	43.00	896	6	NA	NA	NA	NA
Ark_RSV_BV02588_S201	713158	99.99	333198	28262	8.48	28050	NA	44.00	25.00	516	4	NA	NA	NA	NA
Ark_RSV_BV02609_S202	117438	87.78	16340	398	2.44	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02627_S203	70838	93.57	25994	1454	5.59	1410	NA	31.00	15.00	295	NA	NA	NA	NA	NA
Ark_RSV_BV02693_S204	991486	99.28	504144	479683	95.15	471680	228.00	97.00	89.00	36	2	NA	NA	NA	NA
Ark_RSV_BV02702_S205	517662	99.85	323082	320812	99.30	314889	102.00	93.00	82.00	30	2	NA	NA	NA	NA
Ark_RSV_BV02718_S206	343910	99.96	219404	218279	99.49	212606	112.00	97.00	86.00	30	2	NA	NA	NA	NA
Ark_RSV_BV02729_S207	98390	88.08	12234	394	3.22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02735_S212	890716	99.87	475564	40629	8.54	40179	3.00	60.00	42.00	872	3	NA	NA	NA	NA
Ark_RSV_BV02741_S213	388134	97.77	56292	3401	6.04	2298	NA	45.00	19.00	17	NA	NA	NA	NA	NA
Ark_RSV_BV02772_S214	293758	99.60	43188	18214	42.17	17394	9.00	80.00	49.00	28	2	NA	NA	NA	NA
Ark_RSV_BV02773_S215	544528	99.96	341586	340324	99.63	336323	87.00	87.00	71.00	187	2	NA	NA	NA	NA
Ark_RSV_BV02774_S216	568578	99.94	285190	35816	12.56	35710	1.00	51.00	34.00	673	4	NA	NA	NA	NA
Ark_RSV_BV02792_S217	367256	99.09	177610	8892	5.01	8725	NA	45.00	26.00	521	NA	NA	NA	NA	NA
Ark_RSV_BV02794_S218	670748	99.96	389098	387999	99.72	382520	92.00	87.00	70.00	160	NA	NA	NA	NA	NA
Ark_RSV_BV02829_S219	1251248	99.97	815578	810618	99.39	802851	323.00	91.00	82.00	208	3	NA	NA	NA	NA
Ark_RSV_BV02834_S220	820020	98.78	317358	39597	12.48	38748	4.00	64.00	43.00	811	7	NA	NA	NA	NA
Ark_RSV_BV02852_S221	204590	90.16	33706	1570	4.66	1128	NA	36.00	15.00	278	NA	NA	NA	NA	NA
Ark_RSV_BV02853_S222	261568	98.47	119674	11017	9.21	10891	NA	48.00	31.00	633	4	NA	NA	NA	NA
Ark_RSV_BV02854_S223	286564	99.78	142424	15023	10.55	14969	NA	44.00	26.00	520	3	NA	NA	NA	NA
Ark_RSV_BV02857_S224	425112	99.54	209936	22648	10.79	22503	2.00	59.00	35.00	706	6	NA	NA	NA	NA
Ark_RSV_BV02863_S225	299906	99.08	136614	13925	10.19	13824	1.00	50.00	32.00	658	3	NA	NA	NA	NA
Ark_RSV_BV02885_S226	156946	99.48	74534	8384	11.25	8298	NA	43.00	23.00	443	3	NA	NA	NA	NA
Ark_RSV_BV02900_S227	115126	96.40	41916	5984	14.28	5832	NA	45.00	25.00	489	3	NA	NA	NA	NA
Ark_RSV_BV02907_S228	216818	97.70	24622	614	2.49	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02910_S229	206964	90.53	24756	1369	5.53	1158	NA	30.00	12.00	243	NA	NA	NA	NA	NA
Ark_RSV_BV02913_S230	288662	98.21	44608	2087	4.68	1310	NA	31.00	12.00	238	NA	NA	NA	NA	NA
Ark_RSV_BV02938_S231	537172	99.95	349584	348318	99.64	345122	182.00	90.00	76.00	183	1	NA	NA	NA	NA
Ark_RSV_BV02945_S232	194194	90.12	28334	620	2.19	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02948_S233	742722	99.30	364162	33388	9.17	33141	2.00	57.00	40.00	839	6	NA	NA	NA	NA
Ark_RSV_BV02954_S234	487638	99.99	246294	14443	5.86	14224	NA	46.00	25.00	502	1	NA	NA	NA	NA
Ark_RSV_BV02958_S235	50198	61.63	13932	4496	32.27	4384	2.00	60.00	34.00	72	3	NA	NA	NA	NA
Ark_RSV_BV02968_S236	794996	95.49	351418	20652	5.88	20105	2.00	62.00	36.00	714	3	NA	NA	NA	NA
Ark_RSV_BV02972_S237	161842	98.26	73210	2940	4.02	2875	NA	40.00	16.00	317	1	NA	NA	NA	NA
Ark_RSV_BV02975_S238	400324	99.99	194672	16057	8.25	15954	NA	43.00	23.00	452	5	NA	NA	NA	NA
Ark_RSV_BV02977_S239	189810	97.27	111336	104720	94.06	104234	60.00	85.00	73.00	194	3	NA	NA	NA	NA
Ark_RSV_BV02990_S240	198926	78.22	34144	6454	18.90	5955	4.00	67.00	37.00	124	2	NA	NA	NA	NA
Ark_RSV_BV02991_S241	404710	99.98	247520	246839	99.72	240099	88.00	89.00	80.00	48	1	NA	NA	NA	NA
Ark_RSV_BV02992_S242	421094	99.69	265724	263281	99.08	261887	152.00	89.00	78.00	201	3	NA	NA	NA	NA
Ark_RSV_BV02995_S243	698640	99.87	406972	66310	16.29	66153	3.00	59.00	41.00	856	4	NA	NA	NA	NA
Ark_RSV_BV02996_S244	70028	95.49	24084	2391	9.93	2333	NA	36.00	16.00	337	1	NA	NA	NA	NA
Ark_RSV_BV03001_S245	145090	84.82	14320	250	1.75	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03005_S246	473984	99.71	227906	225072	98.76	224156	70.00	86.00	75.00	231	3	NA	NA	NA	NA
Ark_RSV_BV03008_S247	76958	94.92	27778	23305	83.90	23049	8.00	69.00	49.00	113	3	NA	NA	NA	NA
Ark_RSV_BV03010_S248	359424	99.44	191836	179483	93.56	178344	103.00	88.00	75.00	185	3	NA	NA	NA	NA
Ark_RSV_BV03011_S249	467238	99.93	233710	19260	8.24	19089	1.00	50.00	31.00	624	3	NA	NA	NA	NA
Ark_RSV_BV03020_S250	952488	99.86	630786	627366	99.46	624627	369.00	91.00	83.00	214	3	NA	NA	NA	NA
Ark_RSV_BV03021_S251	20012	98.17	6130	5677	92.61	5333	NA	36.00	20.00	42	NA	NA	NA	NA	NA
Ark_RSV_BV03024_S252	37314	86.75	10612	619	5.83	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03025_S253	235790	99.23	115212	5083	4.41	5020	NA	39.00	20.00	404	1	NA	NA	NA	NA
Ark_RSV_BV03032_S254	545960	99.66	264810	19378	7.32	19154	2.00	59.00	36.00	696	3	NA	NA	NA	NA
Ark_RSV_BV03039_S255	387852	98.90	185290	17005	9.18	16818	2.00	55.00	34.00	676	6	NA	NA	NA	NA
Ark_RSV_BV03040_S256	703962	99.14	222936	17514	7.86	16605	1.00	50.00	30.00	607	5	NA	NA	NA	NA
Ark_RSV_BV03041_S257	183734	98.49	86748	82639	95.26	81726	34.00	80.00	66.00	190	3	NA	NA	NA	NA
Ark_RSV_BV03048_S258	358902	99.43	108504	74028	68.23	72151	58.00	93.00	79.00	129	2	NA	NA	NA	NA
Ark_RSV_BV03049_S259	32000	97.85	10348	9324	90.10	9103	8.00	68.00	46.00	124	3	NA	NA	NA	NA
Ark_RSV_BV03055_S260	350116	99.85	180296	11353	6.30	11266	NA	48.00	31.00	628	3	NA	NA	NA	NA
Ark_RSV_BV03061_S261	1510302	99.78	959306	943634	98.37	932280	411.00	94.00	84.00	206	4	NA	NA	NA	NA
Ark_RSV_BV03068_S262	200812	98.91	94348	3782	4.01	3704	NA	37.00	18.00	369	NA	NA	NA	NA	NA
Ark_RSV_BV03073_S263	1077876	99.80	621936	615434	98.95	612100	426.00	96.00	86.00	235	3	NA	NA	NA	NA
Ark_RSV_BV03082_S264	450632	99.70	285300	280293	98.25	278598	144.00	91.00	81.00	202	3	NA	NA	NA	NA
Ark_RSV_BV03104_S265	506598	98.89	197342	163287	82.74	158465	136.00	95.00	85.00	27	3	NA	NA	NA	NA
Ark_RSV_BV03105_S266	482678	99.73	162470	29557	18.19	28518	26.00	82.00	65.00	713	5	NA	NA	NA	NA
Ark_RSV_BV03106_S267	17620	76.62	1694	78	4.60	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03107_S268	812760	99.86	385878	382394	99.10	378874	110.00	87.00	76.00	209	3	NA	NA	NA	NA
Ark_RSV_BV03108_S269	469848	99.72	264630	261734	98.91	259341	187.00	89.00	80.00	236	3	NA	NA	NA	NA
Ark_RSV_BV03109_S270	52160	98.81	22014	20980	95.30	20421	8.00	69.00	47.00	133	2	NA	NA	NA	NA
Ark_RSV_BV03110_S271	465370	99.98	246656	32762	13.28	32686	1.00	52.00	33.00	688	4	NA	NA	NA	NA
Ark_RSV_BV03111_S272	749990	99.59	410152	404562	98.64	402105	250.00	91.00	84.00	232	3	NA	NA	NA	NA
Ark_RSV_BV03155_S273	372872	99.56	135208	15487	11.45	14816	2.00	58.00	33.00	641	6	NA	NA	NA	NA
Ark_RSV_BV03156_S274	384872	98.63	151308	10317	6.82	9691	2.00	55.00	31.00	618	3	NA	NA	NA	NA
Ark_RSV_BV03157_S275	674686	99.77	431072	426771	99.00	421620	147.00	87.00	81.00	204	3	NA	NA	NA	NA
Ark_RSV_BV03158_S276	442806	99.97	226560	21820	9.63	21775	NA	49.00	27.00	557	4	NA	NA	NA	NA
Ark_RSV_BV03159_S277	556138	99.83	302436	298418	98.67	295316	147.00	88.00	79.00	222	3	NA	NA	NA	NA
Ark_RSV_BV03160_S278	486410	99.78	241594	19049	7.88	18780	2.00	52.00	33.00	647	3	NA	NA	NA	NA
Ark_RSV_BV03161_S279	451984	99.69	234798	21039	8.96	20906	2.00	55.00	33.00	676	3	NA	NA	NA	NA
Ark_RSV_BV03162_S280	285280	94.45	86456	61506	71.14	60384	42.00	88.00	73.00	32	2	NA	NA	NA	NA

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	Variant calling metrics	# Input reads	Total number of reads in raw fastq file	`# Input reads`	None
\|\|	Variant calling metrics	% Non-host reads (Kraken 2)	Total number of non-host reads identified by Kraken2	`% Non-host reads (Kraken 2)`	None
\|\|	Variant calling metrics	# Trimmed reads (fastp)	Total number of reads remaining after adapter/quality trimming with fastp	`# Trimmed reads (fastp)`	None
\|\|	Variant calling metrics	# Mapped reads	Total number of Bowtie2 mapped reads relative to the viral genome	`# Mapped reads`	None
\|\|	Variant calling metrics	% Mapped reads	Percentage of Bowtie2 mapped reads relative to the viral genome	`% Mapped reads`	None
\|\|	Variant calling metrics	# Trimmed reads (iVar)	Total number of reads remaining after primer trimming with iVar	`# Trimmed reads (iVar)`	None
\|\|	Variant calling metrics	Coverage median	Median coverage calculated by mosdepth	`Coverage median`	None
\|\|	Variant calling metrics	% Coverage > 1x	Coverage > 1x calculated by mosdepth	`% Coverage > 1x`	None
\|\|	Variant calling metrics	% Coverage > 10x	Coverage > 10x calculated by mosdepth	`% Coverage > 10x`	None
\|\|	Variant calling metrics	# SNPs	Total number of SNPs	`# SNPs`	None
\|\|	Variant calling metrics	# INDELs	Total number of INDELs	`# INDELs`	None
\|\|	Variant calling metrics	# Missense variants	Total number of variants identified as missense mutations with SnpEff	`# Missense variants`	None
\|\|	Variant calling metrics	# Ns per 100kb consensus	Number of N bases per 100kb in consensus sequence	`# Ns per 100kb consensus`	None
\|\|	Variant calling metrics	Pangolin lineage	Pangolin lineage inferred from the consensus sequence	`Pangolin lineage`	None
\|\|	Variant calling metrics	Nextclade clade	Nextclade clade inferred from the consensus sequence	`Nextclade clade`	None

De novo assembly metrics

generated by the nf-core/viralrecon pipeline.

Showing ³⁸⁴/₃₈₄ rows and ¹⁵/₁₅ columns.

Sample	# Input reads	# Trimmed reads (Cutadapt)	% Non-host reads (Kraken 2)	# Contigs (SPAdes)	Largest contig (SPAdes)	% Genome fraction (SPAdes)	N50 (SPAdes)	# Contigs (Unicycler)	Largest contig (Unicycler)	% Genome fraction (Unicycler)	N50 (Unicycler)	# Contigs (minia)	Largest contig (minia)	% Genome fraction (minia)	N50 (minia)
Ark_RSV_B400003_S208	101342	61202	99.53	18	1482	58.18	806.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400004_S209	240546	130710	98.57	20	2286	72.96	1340.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400005_S210	1391270	873500	99.89	15	4911	83.53	3655.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400007_S211	501264	245890	99.89	19	3063	55.89	1500.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400011_S281	828514	485458	99.85	15	2347	71.90	1340.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400012_S282	485444	287466	99.55	17	3674	87.94	1895.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400014_S283	463172	291790	99.96	22	1698	62.28	938.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400016_S284	1115436	693458	99.91	15	3303	79.59	1985.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400020_S285	835866	551040	99.94	17	1799	71.74	1355.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400022_S286	362302	220976	99.95	14	3047	78.08	1369.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400023_S287	868008	481256	99.93	20	2025	69.81	1344.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400024_S288	642990	304608	99.94	18	2604	67.30	1576.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400025_S289	276670	156770	99.14	41	975	-	737.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400026_S290	856372	439834	99.23	34	1834	-	967.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400027_S291	1228970	664490	99.73	29	1517	-	1109.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400028_S292	440166	205414	98.89	23	1062	-	759.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400029_S293	1076646	566076	99.85	18	1239	-	1111.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400036_S294	2652552	1763908	99.96	9	4525	89.93	2822.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400038_S295	237136	146520	99.92	18	1711	49.47	1401.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400041_S296	423332	238362	99.60	14	4036	69.52	2102.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400042_S297	993116	614390	99.88	32	2473	93.17	1511.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400046_S298	645434	356182	99.64	25	1799	-	815.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400047_S299	582906	392278	99.70	20	1426	67.75	992.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400048_S300	710170	446754	99.60	19	3724	72.84	1713.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400049_S301	908334	446916	99.34	27	3269	75.93	961.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400050_S302	1557160	796434	99.80	20	2819	84.52	1180.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400051_S303	1626962	931356	99.69	21	2726	83.44	2010.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400052_S304	3151410	2053440	99.96	28	1934	85.87	1535.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400059_S305	531636	277330	99.26	24	2625	79.33	1498.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400060_S306	527062	334474	99.41	24	2035	82.05	1179.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400062_S307	861660	451138	99.98	10	5328	-	2782.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400064_S308	512888	331198	99.94	17	1799	73.04	1355.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400066_S309	164938	73944	98.41	21	1501	47.48	991.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400067_S310	332648	184808	99.27	18	2025	80.19	1441.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400068_S311	541140	309292	99.86	19	2676	72.06	1268.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400069_S312	448160	259344	99.56	21	1799	72.37	1111.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400073_S313	498970	322334	99.54	19	2200	81.48	1484.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400074_S314	323888	168878	99.68	16	1884	74.17	1337.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400076_S315	855924	529770	99.85	20	2482	86.61	2028.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400079_S316	275302	164014	99.72	21	1798	58.91	1111.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400083_S317	534850	276102	99.97	13	3078	-	1367.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400084_S318	1053724	567820	99.99	12	4299	-	3021.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400087_S319	569488	370026	99.94	13	3938	86.23	1365.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400088_S320	753818	407138	99.97	10	7248	-	7248.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400091_S321	1414034	847178	99.96	12	3390	93.43	2590.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400094_S322	1027018	565324	99.92	13	4182	91.40	1843.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400095_S323	525584	300086	99.96	18	1600	73.04	1148.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400096_S324	652944	394166	99.96	14	2969	77.47	1429.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400099_S325	562356	357662	99.86	14	2026	76.70	1438.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400100_S326	962810	482730	99.74	23	2693	72.98	1354.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400104_S327	466866	212372	99.76	14	3046	3.35	1037.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400105_S328	441876	222218	99.97	12	5242	-	1636.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400106_S329	523034	180800	98.06	35	2004	81.55	1168.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400107_S330	1525008	920068	99.72	26	2382	88.09	1481.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400111_S331	456364	102226	95.61	36	1884	60.76	1104.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400116_S332	438180	268728	99.67	15	9664	95.72	9664.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400117_S333	237354	33050	97.18	28	1882	41.56	913.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400118_S334	664936	401912	99.95	9	9540	94.69	9540.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400119_S335	409522	170990	98.24	18	7392	89.04	7392.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400120_S336	685222	388116	99.48	16	6921	90.89	2038.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400125_S337	360114	209640	99.28	17	2204	74.13	1484.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400126_S338	609178	289786	99.11	32	1332	61.18	814.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400129_S339	388338	247328	99.21	25	1701	75.05	1179.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400130_S340	1028958	644828	99.64	26	2008	76.57	1271.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400131_S341	463824	288688	99.79	6	9007	90.77	9007.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400132_S342	1215946	589936	99.89	19	4482	-	4050.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400133_S343	1501826	1012040	99.95	17	2840	78.22	1295.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400134_S344	699210	373554	99.93	16	3063	62.01	1820.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400135_S345	532884	296094	99.76	15	2118	80.87	1430.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400136_S346	978352	643830	99.94	15	1889	74.97	1152.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400137_S347	970530	543402	99.30	15	6383	90.66	2786.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400138_S348	1173936	562046	99.63	18	5241	-	3860.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400145_S349	476094	320078	99.97	18	1719	68.70	1179.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400146_S350	595232	351284	99.91	18	3306	76.15	1446.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400147_S351	462104	292604	99.98	14	3810	88.21	1882.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400148_S352	576204	339600	99.60	20	1815	72.95	975.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400149_S353	481946	157596	98.36	30	1889	66.65	1147.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400156_S354	982898	507426	99.77	21	2029	81.99	1485.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400157_S355	503088	268120	99.94	7	5242	0.70	3854.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400158_S356	271096	166942	99.86	16	2726	66.07	1174.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400160_S357	384376	61902	99.26	26	1044	37.24	732.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400161_S358	1398500	668060	99.84	15	8438	0.70	8438.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400162_S359	468376	204856	98.31	16	7429	94.57	7429.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400163_S360	210592	25818	88.04	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400169_S361	592190	319130	99.97	8	5244	-	3819.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400170_S362	862926	550580	99.95	5	9683	97.21	9683.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400171_S363	155570	81558	99.64	21	1991	56.31	1299.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400174_S364	300560	167378	99.53	18	2082	75.36	1350.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400178_S365	601378	364014	99.81	14	4159	92.16	1882.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400179_S366	1480216	793166	99.62	25	1885	77.69	1179.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400182_S367	251074	125702	99.30	16	2725	66.79	1175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400185_S368	438448	262428	99.95	19	1789	67.54	1152.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400186_S369	149938	61212	97.92	20	2079	63.64	1160.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400187_S370	23548	4362	98.60	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400188_S371	484706	110588	98.05	25	4291	61.25	1861.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400191_S372	395018	55282	97.67	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400193_S373	952180	379190	99.51	29	1884	68.09	1178.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400198_S374	99268	50756	99.75	16	1758	38.18	1677.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400200_S375	373992	231688	99.73	18	2203	73.26	1493.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400202_S376	447118	284738	99.98	8	7592	87.50	7592.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400203_S377	211404	30974	92.91	34	1257	31.79	707.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400204_S378	1478724	881460	99.79	13	3285	86.14	1677.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400218_S379	221150	27834	95.34	18	1067	10.71	1067.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400221_S380	836164	385536	99.73	20	3222	85.30	1503.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400223_S381	97610	13242	97.83	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400225_S382	1445504	721852	99.88	23	2839	82.50	1429.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400226_S383	119390	42060	97.03	16	4169	73.18	2139.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_B400233_S384	114886	7510	99.50	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00001_S1	292026	39870	80.45	41	1501	26.39	863.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00002_S2	1259578	710960	98.38	53	4675	73.91	1720.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00006_S3	163890	24602	91.24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00010_S4	208922	28272	80.50	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00020_S5	51374	6962	74.54	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00022_S6	1499352	889506	99.90	16	3765	93.56	2029.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00023_S7	620740	368092	99.96	11	3589	84.77	1576.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00025_S8	626578	383726	99.36	21	7335	95.80	2410.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00026_S9	296284	73188	97.33	27	1882	59.39	1010.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00037_S10	422232	193234	96.69	28	9009	90.71	9009.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00038_S11	57836	10516	81.23	26	1489	32.27	1107.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00040_S12	183014	79836	95.01	37	1697	61.39	1175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00069_S13	126254	20396	84.80	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00080_S14	322616	196388	99.67	17	2597	79.07	1175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00081_S15	739470	393724	99.96	18	1927	64.42	1576.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00083_S16	73350	9634	86.81	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00086_S17	211846	119598	99.23	19	4292	77.60	2674.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00088_S18	588256	331952	99.17	39	1800	70.54	1257.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00107_S19	135296	16614	71.62	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00125_S20	99752	17396	80.08	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00127_S21	229756	36230	89.26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00132_S22	314930	35202	80.66	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00139_S23	226218	29300	80.58	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00141_S24	207152	32150	83.24	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00142_S25	248180	29852	67.02	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00143_S26	1093154	714320	99.74	23	2073	70.18	1271.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00148_S27	359182	46920	89.38	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00150_S28	748740	478270	99.68	27	2198	77.92	1355.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00157_S29	425860	246636	99.89	16	3269	77.47	1576.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00190_S30	395346	35994	83.28	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00194_S31	855294	427258	99.27	14	6240	94.46	2394.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00195_S32	882874	452974	99.27	25	2016	80.30	1239.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00211_S33	528510	323152	99.87	17	2607	77.31	1180.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00212_S34	340552	193824	98.44	31	3789	82.16	2778.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00213_S35	221608	33846	84.86	47	2400	53.05	1876.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00215_S36	226298	36782	91.18	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00216_S37	815782	468148	99.60	31	2797	74.54	1576.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00223_S38	683500	451056	99.89	17	1813	75.45	1354.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00226_S39	358390	89964	97.31	21	3266	76.81	1556.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00247_S40	238374	146292	99.95	18	4478	74.07	1979.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00263_S41	419304	192076	99.90	18	1883	67.09	1299.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00267_S42	242730	45904	89.76	28	3369	64.93	1878.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00268_S43	563652	346436	99.75	10	5934	92.33	3225.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00271_S44	706346	379514	99.99	9	4268	-	3023.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00287_S45	555412	305766	99.12	27	2107	75.58	1491.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00288_S46	1295140	740862	99.55	41	4863	88.58	2487.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00290_S47	151984	29920	87.06	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00301_S48	76252	12412	71.90	35	1030	15.82	843.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00305_S49	663330	396262	99.75	8	5465	95.84	4277.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00310_S50	603332	307666	98.98	32	1884	71.46	1340.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00311_S51	192504	34660	89.65	34	1281	38.01	1099.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00335_S52	204018	22010	95.60	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00339_S53	127430	73458	99.95	14	4397	62.89	1250.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00343_S54	344638	40300	88.72	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00356_S55	329800	181510	98.90	31	3303	63.88	1498.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00358_S56	983976	498960	99.47	21	4623	92.61	1823.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00362_S57	982676	508114	98.96	27	3286	83.09	3175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00367_S58	204268	123808	99.69	12	7220	77.60	7220.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00371_S59	197382	25156	82.43	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00378_S60	693000	434586	99.75	15	7733	94.74	7733.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00382_S61	191636	24772	74.06	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00387_S62	412516	267510	99.93	6	4426	94.48	3129.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00400_S63	216234	29386	79.37	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00404_S64	212928	24716	48.55	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00422_S65	214844	65700	98.45	36	1001	-	912.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00436_S66	517512	309748	99.78	32	1715	69.86	1160.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00438_S67	569308	339698	99.73	22	2756	71.95	1682.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00439_S68	887754	500028	99.87	20	3480	80.12	3184.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00455_S69	721816	441782	99.93	7	8701	92.99	8701.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00470_S70	736570	482892	99.98	6	9585	96.76	9585.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00476_S71	540054	312102	99.88	18	2041	71.86	1188.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00478_S72	165292	19790	92.89	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00482_S73	327428	208626	99.89	10	9167	92.38	9167.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00484_S74	4	2	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00487_S75	304912	82704	99.69	16	2936	84.71	2106.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00488_S76	250718	19962	92.75	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00500_S77	174918	14368	90.29	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00511_S78	245624	21630	83.99	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00521_S79	840924	452264	98.74	48	1861	-	1041.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00526_S80	264112	27248	98.39	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00538_S81	191164	20728	85.43	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00539_S82	174060	58498	98.48	22	4420	75.87	1861.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00542_S83	157216	15398	78.50	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00553_S84	182270	20812	84.86	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00557_S85	153482	17342	88.76	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00567_S86	338528	179184	99.50	26	1456	-	941.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00580_S87	492542	302340	99.92	15	3035	81.09	1484.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00596_S88	216440	76388	96.88	28	1862	65.45	1092.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00600_S89	831888	445696	99.98	14	4162	-	2534.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00601_S90	243992	46990	93.34	35	2441	61.55	1168.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00639_S91	279652	93130	96.76	35	1692	64.84	1175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00642_S92	1096058	606528	99.71	13	4280	93.61	4068.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00648_S93	299600	114116	99.10	25	2202	59.49	1125.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00653_S94	155646	87448	99.72	10	4292	84.66	3207.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00654_S95	493008	293694	99.93	18	2101	74.00	1428.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00658_S96	228188	116564	99.80	11	7661	-	7661.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00670_S97	362348	76340	99.78	20	2102	65.25	991.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00678_S98	249016	39830	96.80	25	1681	51.16	927.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00679_S99	467168	264648	99.77	17	2035	64.67	969.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00682_S100	240168	68338	99.20	24	2726	39.17	1685.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00684_S101	549910	274186	99.81	15	3171	80.82	2107.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00688_S102	709884	442832	99.96	11	4292	89.50	1882.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00697_S103	3285352	1756392	99.97	8	9250	-	9250.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00713_S104	165990	63358	98.39	14	7059	76.94	7059.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00726_S105	1163946	714674	99.91	8	9682	97.16	9682.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00743_S106	615360	337014	99.79	22	3175	78.26	973.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00749_S107	310794	182470	99.41	19	2390	74.48	1111.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00758_S108	251228	31488	89.38	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00760_S109	484692	279250	99.85	10	5285	86.04	2833.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00766_S110	698144	413300	99.96	12	2962	82.18	1679.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00768_S111	1561946	854656	99.85	23	1990	89.49	1158.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00772_S112	387916	253212	99.42	21	1698	59.64	1175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00773_S113	1065166	568846	99.68	17	3173	73.94	1192.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00780_S114	505362	319840	99.86	8	5321	90.89	4162.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00797_S115	755672	446650	99.65	11	7218	85.12	7218.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00809_S116	1073790	507234	99.71	22	3765	81.33	1663.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00818_S117	607250	356086	99.97	14	3172	85.48	1176.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00823_S118	906684	541516	99.89	10	3206	89.52	2121.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00845_S119	66958	6358	60.76	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00847_S120	28998	6516	92.98	14	2735	30.65	2735.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00855_S121	882866	472116	99.74	26	2025	82.61	1428.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00857_S122	1263298	811196	99.86	9	11624	97.18	11624.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00875_S123	1215732	556126	99.34	29	2085	73.70	1209.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00888_S124	258610	113212	98.48	19	5942	72.24	5942.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00896_S125	316878	37260	98.41	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00901_S126	128534	68846	99.16	18	1208	57.39	923.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00906_S127	504746	166242	97.87	22	6426	86.32	1859.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00920_S128	1018584	508812	99.95	14	5242	-	2818.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00927_S129	479684	281186	99.56	30	1817	70.74	1160.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00930_S130	833270	372000	99.99	10	3915	-	3032.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00936_S131	317878	52554	85.68	35	2203	45.84	1520.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00939_S132	292856	42136	98.22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00940_S133	339722	137194	96.81	26	1884	70.55	1429.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00951_S134	479608	268904	98.99	17	8427	91.51	8427.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00976_S135	216136	132014	99.49	17	1481	65.16	1107.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00980_S136	395892	108568	96.22	25	5548	83.34	1861.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00981_S137	183474	16308	71.63	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV00999_S138	1028190	608658	99.85	21	2010	75.68	1238.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01000_S139	466110	233862	99.76	26	2204	76.07	1175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01006_S140	1072604	633776	99.93	3	9681	100.00	9681.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01008_S141	298000	182926	99.96	11	7059	73.51	7059.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01022_S142	446538	239098	99.96	10	5301	-	3095.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01049_S143	957856	517256	99.51	14	9539	96.55	9539.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01067_S144	562290	342358	99.97	10	5722	86.55	1400.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01068_S145	2141198	1362470	99.85	11	3977	97.37	2591.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01076_S146	120456	16506	93.12	17	1129	-	829.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01083_S147	481756	253492	99.75	12	5242	-	3853.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01088_S148	1200482	627254	99.94	15	5155	-	3082.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01094_S149	2247524	1368216	99.97	4	5285	96.49	5244.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01097_S150	136420	26096	96.57	19	3423	-	2406.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01100_S151	634856	325446	99.45	11	8815	91.70	8815.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01102_S152	118084	14022	97.52	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01116_S153	391420	224648	99.70	25	2011	68.00	1175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01130_S154	1177110	674896	99.74	7	9539	95.82	9539.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01145_S155	729924	492384	99.98	14	3049	74.97	1465.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01165_S156	312486	147534	98.62	21	3849	91.32	3144.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01170_S157	28308	2834	90.83	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01175_S158	308842	179598	99.35	14	5109	89.58	2079.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01195_S159	486544	209688	99.51	21	3059	89.47	1611.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01216_S160	409150	265462	99.94	19	2087	68.59	1174.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01218_S161	707538	330486	99.59	11	9149	95.59	9149.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01235_S162	1277082	655176	99.95	8	5037	-	3816.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01247_S163	581290	356890	99.65	12	5125	88.93	3836.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01329_S164	177908	22244	85.86	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01355_S165	1045350	629240	97.58	15	9045	94.42	9045.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01359_S166	128840	71698	99.57	21	2845	63.97	1087.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01402_S167	257484	36216	88.49	31	1142	23.46	630.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01406_S168	521032	304552	99.76	17	3264	76.61	1576.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01408_S169	386090	213456	97.79	15	9007	91.17	9007.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01413_S170	1585664	828658	99.89	11	5034	-	3844.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01416_S171	410508	232924	98.56	25	4539	83.74	1158.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01418_S172	1291088	780114	99.81	8	7831	95.37	7831.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01428_S173	459664	287664	99.56	20	1711	71.44	1259.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01430_S174	435158	149452	98.20	27	3235	68.67	1136.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01431_S175	609162	316946	99.69	17	2056	74.89	1575.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01443_S176	432480	231964	99.26	24	1899	77.92	1443.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01467_S177	1092258	541618	99.94	9	5489	-	3796.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01486_S178	1493276	833786	99.87	13	4428	79.68	2392.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01515_S179	292864	42754	99.03	22	1435	24.04	1146.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01523_S180	275652	33980	96.33	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01525_S181	533494	331930	99.91	16	2724	72.15	1459.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01569_S182	690194	308924	99.58	22	9177	93.91	9177.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01606_S183	798114	427768	99.99	10	3049	-	2084.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01609_S184	355970	170088	99.90	12	4268	-	3055.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01688_S185	375824	229608	99.94	8	8265	88.44	8265.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01689_S186	6006	2722	100.00	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01690_S187	41618	2608	68.81	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01766_S188	1019136	666128	99.94	15	1948	73.52	1366.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01767_S189	1111138	514324	99.64	11	5478	-	3800.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01768_S190	72306	16572	92.99	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01852_S191	698942	415066	99.98	9	5399	90.31	3207.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01853_S192	35376	2736	71.66	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01854_S193	649560	178568	98.47	14	4268	-	3058.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01919_S194	1701368	1050170	99.84	21	2214	92.52	1889.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01922_S195	188570	15746	76.15	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01950_S196	134398	14532	78.56	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01958_S197	378068	187312	99.59	8	7059	90.55	7059.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV01960_S198	232362	30352	93.26	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02099_S199	1788628	941652	99.97	5	5285	-	5129.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02196_S200	1684068	898062	99.96	8	5140	-	3469.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02588_S201	713158	333154	99.99	16	3444	-	2620.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02609_S202	117438	14344	87.78	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02627_S203	70838	24322	93.57	21	3200	-	1273.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02693_S204	991486	500532	99.28	11	9007	96.42	9007.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02702_S205	517662	322592	99.85	10	7591	87.69	7591.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02718_S206	343910	219308	99.96	7	9155	92.16	9155.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02729_S207	98390	10776	88.08	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02735_S212	890716	474932	99.87	6	5246	-	3951.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02741_S213	388134	55036	97.77	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02772_S214	293758	43016	99.60	17	2060	60.30	1327.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02773_S215	544528	341444	99.96	22	2726	67.45	1175.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02774_S216	568578	285014	99.94	12	7248	-	7248.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02792_S217	367256	175998	99.09	7	4366	-	3901.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02794_S218	670748	388948	99.96	18	1429	69.09	1173.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02829_S219	1251248	815302	99.97	14	1887	78.27	1354.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02834_S220	820020	313488	98.78	19	5242	-	3842.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02852_S221	204590	30390	90.16	33	2032	-	793.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02853_S222	261568	117844	98.47	13	7478	-	7478.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02854_S223	286564	142114	99.78	15	3544	-	2678.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02857_S224	425112	208976	99.54	13	5243	-	3839.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02863_S225	299906	135352	99.08	11	9100	-	9100.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02885_S226	156946	74150	99.48	12	3078	-	1882.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02900_S227	115126	40408	96.40	15	5242	-	3139.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02907_S228	216818	24056	97.70	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02910_S229	206964	22412	90.53	27	2034	-	864.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02913_S230	288662	43810	98.21	27	1072	-	856.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02938_S231	537172	349420	99.95	17	1751	79.82	1178.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02945_S232	194194	25536	90.12	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02948_S233	742722	361602	99.30	21	3845	-	2485.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02954_S234	487638	246276	99.99	11	4288	-	3119.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02958_S235	50198	8586	61.63	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02968_S236	794996	335570	95.49	73	5034	-	4107.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02972_S237	161842	71934	98.26	18	3078	-	1541.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02975_S238	400324	194646	99.99	13	2976	-	1419.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02977_S239	189810	108294	97.27	38	2086	73.00	1697.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02990_S240	198926	26708	78.22	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02991_S241	404710	247482	99.98	11	4494	78.76	2283.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02992_S242	421094	264904	99.69	18	3173	79.19	1428.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02995_S243	698640	406424	99.87	7	7426	-	7426.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV02996_S244	70028	22998	95.49	20	2300	-	1238.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03001_S245	145090	12146	84.82	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03005_S246	473984	227240	99.71	28	1792	56.99	992.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03008_S247	76958	26368	94.92	21	1577	42.95	898.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03010_S248	359424	190758	99.44	22	2087	70.18	1465.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03011_S249	467238	233556	99.93	9	4269	-	4026.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03020_S250	952488	629934	99.86	20	2840	77.94	1236.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03021_S251	20012	6018	98.17	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03024_S252	37314	9206	86.75	21	1436	-	1148.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03025_S253	235790	114324	99.23	15	2618	-	1379.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03032_S254	545960	263904	99.66	14	5244	-	3043.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03039_S255	387852	183252	98.90	10	3935	-	3647.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03040_S256	703962	221028	99.14	21	5242	-	3041.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03041_S257	183734	85436	98.49	23	1883	55.46	1162.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03048_S258	358902	107888	99.43	18	3408	83.78	1804.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03049_S259	32000	10126	97.85	21	991	37.59	746.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03055_S260	350116	180018	99.85	9	4183	-	2944.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03061_S261	1510302	957160	99.78	22	2025	80.13	1465.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03068_S262	200812	93324	98.91	18	2911	-	2032.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03073_S263	1077876	620672	99.80	18	6060	72.41	6060.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03082_S264	450632	284438	99.70	23	1782	78.06	1384.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03104_S265	506598	195154	98.89	13	7591	94.64	7591.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03105_S266	482678	162036	99.73	32	2319	28.32	1591.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03106_S267	17620	1298	76.62	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03107_S268	812760	385322	99.86	20	1888	68.25	1183.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03108_S269	469848	263902	99.72	19	1883	70.72	1176.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03109_S270	52160	21752	98.81	21	1010	29.78	784.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03110_S271	465370	246614	99.98	11	3578	-	3020.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03111_S272	749990	408480	99.59	21	1783	69.52	1179.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03155_S273	372872	134608	99.56	16	3660	-	2151.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03156_S274	384872	149236	98.63	14	5242	-	3023.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03157_S275	674686	430080	99.77	21	1918	70.87	1111.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03158_S276	442806	226490	99.97	10	4268	-	4109.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03159_S277	556138	301924	99.83	26	2230	69.11	1135.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03160_S278	486410	241064	99.78	12	5143	-	1588.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03161_S279	451984	234080	99.69	9	4382	-	3207.00	NA	NA	NA	NA	NA	NA	NA	NA
Ark_RSV_BV03162_S280	285280	81658	94.45	27	2630	74.22	1861.00	NA	NA	NA	NA	NA	NA	NA	NA

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	De novo assembly metrics	# Input reads	Total number of reads in raw fastq file	`# Input reads`	None
\|\|	De novo assembly metrics	# Trimmed reads (Cutadapt)	Total number of reads remaining after adapter/quality trimming with fastp	`# Trimmed reads (Cutadapt)`	None
\|\|	De novo assembly metrics	% Non-host reads (Kraken 2)	Total number of non-host reads identified by Kraken2	`% Non-host reads (Kraken 2)`	None
\|\|	De novo assembly metrics	# Contigs (SPAdes)	Total number of contigs in SPAdes assembly as calculated by QUAST	`# Contigs (SPAdes)`	None
\|\|	De novo assembly metrics	Largest contig (SPAdes)	Size of largest contig in SPAdes assembly as calculated by QUAST	`Largest contig (SPAdes)`	None
\|\|	De novo assembly metrics	% Genome fraction (SPAdes)	% genome fraction for SPAdes assembly as calculated by QUAST	`% Genome fraction (SPAdes)`	None
\|\|	De novo assembly metrics	N50 (SPAdes)	N50 metric for SPAdes assembly as calculated by QUAST	`N50 (SPAdes)`	None
\|\|	De novo assembly metrics	# Contigs (Unicycler)	Total number of contigs in Unicycler assembly as calculated by QUAST	`# Contigs (Unicycler)`	None
\|\|	De novo assembly metrics	Largest contig (Unicycler)	Size of largest contig in Unicycler assembly as calculated by QUAST	`Largest contig (Unicycler)`	None
\|\|	De novo assembly metrics	% Genome fraction (Unicycler)	% genome fraction for Unicycler assembly as calculated by QUAST	`% Genome fraction (Unicycler)`	None
\|\|	De novo assembly metrics	N50 (Unicycler)	N50 metric for Unicycler assembly as calculated by QUAST	`N50 (Unicycler)`	None
\|\|	De novo assembly metrics	# Contigs (minia)	Total number of contigs in minia assembly as calculated by QUAST	`# Contigs (minia)`	None
\|\|	De novo assembly metrics	Largest contig (minia)	Size of largest contig in minia assembly as calculated by QUAST	`Largest contig (minia)`	None
\|\|	De novo assembly metrics	% Genome fraction (minia)	% genome fraction for minia assembly as calculated by QUAST	`% Genome fraction (minia)`	None
\|\|	De novo assembly metrics	N50 (minia)	N50 metric for minia assembly as calculated by QUAST	`N50 (minia)`	None

Amplicon coverage heatmap

Heatmap to show median log10(coverage+1) per amplicon across samples.

Min:

Max:

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PREPROCESS: FastQC (raw reads)

PREPROCESS: FastQC (raw reads) This section of the report shows FastQC results for the raw reads before adapter trimming.

Sequence Counts

Sequence counts for each sample. Duplicate read counts are an estimate only.

This plot show the total number of reads, broken down into unique and duplicate if possible (only more recent versions of FastQC give duplicate info).

You can read more about duplicate calculation in the FastQC documentation. A small part has been copied here for convenience:

Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Quality Histograms

The mean quality value across each base position in the read.

To enable multiple samples to be plotted on the same graph, only the mean quality scores are plotted (unlike the box plots seen in FastQC reports).

Taken from the FastQC help:

The y-axis on the graph shows the quality scores. The higher the score, the better the base call. The background of the graph divides the y axis into very good quality calls (green), calls of reasonable quality (orange), and calls of poor quality (red). The quality of calls on most platforms will degrade as the run progresses, so it is common to see base calls falling into the orange area towards the end of a read.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Sequence Quality Scores

The number of reads with average quality scores. Shows if a subset of reads has poor quality.

From the FastQC help:

The per sequence quality score report allows you to see if a subset of your sequences have universally low quality values. It is often the case that a subset of sequences will have universally poor quality, however these should represent only a small percentage of the total sequences.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base Sequence Content

The proportion of each base position for which each of the four normal DNA bases has been called.

To enable multiple samples to be shown in a single plot, the base composition data is shown as a heatmap. The colours represent the balance between the four bases: an even distribution should give an even muddy brown colour. Hover over the plot to see the percentage of the four bases under the cursor.

To see the data as a line plot, as in the original FastQC graph, click on a sample track.

From the FastQC help:

Per Base Sequence Content plots out the proportion of each base position in a file for which each of the four normal DNA bases has been called.

In a random library you would expect that there would be little to no difference between the different bases of a sequence run, so the lines in this plot should run parallel with each other. The relative amount of each base should reflect the overall amount of these bases in your genome, but in any case they should not be hugely imbalanced from each other.

It's worth noting that some types of library will always produce biased sequence composition, normally at the start of the read. Libraries produced by priming using random hexamers (including nearly all RNA-Seq libraries) and those which were fragmented using transposases inherit an intrinsic bias in the positions at which reads start. This bias does not concern an absolute sequence, but instead provides enrichement of a number of different K-mers at the 5' end of the reads. Whilst this is a true technical bias, it isn't something which can be corrected by trimming and in most cases doesn't seem to adversely affect the downstream analysis.

Click a sample row to see a line plot for that dataset.

Rollover for sample name

Position: -

%T: -

%C: -

%A: -

%G: -

Per Sequence GC Content

The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content.

From the FastQC help:

This module measures the GC content across the whole length of each sequence in a file and compares it to a modelled normal distribution of GC content.

In a normal random library you would expect to see a roughly normal distribution of GC content where the central peak corresponds to the overall GC content of the underlying genome. Since we don't know the the GC content of the genome the modal GC content is calculated from the observed data and used to build a reference distribution.

An unusually shaped distribution could indicate a contaminated library or some other kinds of biased subset. A normal distribution which is shifted indicates some systematic bias which is independent of base position. If there is a systematic bias which creates a shifted normal distribution then this won't be flagged as an error by the module since it doesn't know what your genome's GC content should be.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Per Base N Content

The percentage of base calls at each position for which an N was called.

From the FastQC help:

If a sequencer is unable to make a base call with sufficient confidence then it will normally substitute an N rather than a conventional base call. This graph shows the percentage of base calls at each position for which an N was called.

It's not unusual to see a very low proportion of Ns appearing in a sequence, especially nearer the end of a sequence. However, if this proportion rises above a few percent it suggests that the analysis pipeline was unable to interpret the data well enough to make valid base calls.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Length Distribution

All samples have sequences of a single length (151bp).

Sequence Duplication Levels

The relative level of duplication found for every sequence.

From the FastQC Help:

In a diverse library most sequences will occur only once in the final set. A low level of duplication may indicate a very high level of coverage of the target sequence, but a high level of duplication is more likely to indicate some kind of enrichment bias (eg PCR over amplification). This graph shows the degree of duplication for every sequence in a library: the relative number of sequences with different degrees of duplication.

Only sequences which first appear in the first 100,000 sequences in each file are analysed. This should be enough to get a good impression for the duplication levels in the whole file. Each sequence is tracked to the end of the file to give a representative count of the overall duplication level.

The duplication detection requires an exact sequence match over the whole length of the sequence. Any reads over 75bp in length are truncated to 50bp for this analysis.

In a properly diverse library most sequences should fall into the far left of the plot in both the red and blue lines. A general level of enrichment, indicating broad oversequencing in the library will tend to flatten the lines, lowering the low end and generally raising other categories. More specific enrichments of subsets, or the presence of low complexity contaminants will tend to produce spikes towards the right of the plot.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Overrepresented sequences

The total amount of overrepresented sequences found in each library.

FastQC calculates and lists overrepresented sequences in FastQ files. It would not be possible to show this for all samples in a MultiQC report, so instead this plot shows the number of sequences categorized as over represented.

Sometimes, a single sequence may account for a large number of reads in a dataset. To show this, the bars are split into two: the first shows the overrepresented reads that come from the single most common sequence. The second shows the total count from all remaining overrepresented sequences.

From the FastQC Help:

A normal high-throughput library will contain a diverse set of sequences, with no individual sequence making up a tiny fraction of the whole. Finding that a single sequence is very overrepresented in the set either means that it is highly biologically significant, or indicates that the library is contaminated, or not as diverse as you expected.

FastQC lists all of the sequences which make up more than 0.1% of the total. To conserve memory only sequences which appear in the first 100,000 sequences are tracked to the end of the file. It is therefore possible that a sequence which is overrepresented but doesn't appear at the start of the file for some reason could be missed by this module.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Adapter Content

The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position.

Note that only samples with ≥ 0.1% adapter contamination are shown.

There may be several lines per sample, as one is shown for each adapter detected in the file.

From the FastQC Help:

The plot shows a cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. Once a sequence has been seen in a read it is counted as being present right through to the end of the read so the percentages you see will only increase as the read length goes on.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Status Checks

Status for each FastQC section showing whether results seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

FastQC assigns a status for each section of the report. These give a quick evaluation of whether the results of the analysis seem entirely normal (green), slightly abnormal (orange) or very unusual (red).

It is important to stress that although the analysis results appear to give a pass/fail result, these evaluations must be taken in the context of what you expect from your library. A 'normal' sample as far as FastQC is concerned is random and diverse. Some experiments may be expected to produce libraries which are biased in particular ways. You should treat the summary evaluations therefore as pointers to where you should concentrate your attention and understand why your library may not look random and diverse.

Specific guidance on how to interpret the output of each module can be found in the relevant report section, or in the FastQC help.

In this heatmap, we summarise all of these into a single heatmap for a quick overview. Note that not all FastQC sections have plots in MultiQC reports, but all status checks are shown in this heatmap.

Min:

Max:

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PREPROCESS: fastp (adapter trimming)

PREPROCESS: fastp (adapter trimming) This section of the report shows fastp results for reads after adapter and quality trimming.DOI: 10.1093/bioinformatics/bty560.

Filtered Reads

Filtering statistics of sampled reads.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Insert Sizes

Insert size estimation of sampled reads.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Sequence Quality

Average sequencing quality over each base of all reads.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

GC Content

Average GC content over each base of all reads.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

N content

Average N content over each base of all reads.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

PREPROCESS: Kraken 2

PREPROCESS: Kraken 2 This section of the report shows Kraken 2 classification results for reads after adapter trimming with fastp.DOI: 10.1186/gb-2014-15-3-r46.

Top taxa

The number of reads falling into the top 5 taxa across different ranks.

To make this plot, the percentage of each sample assigned to a given taxa is summed across all samples. The counts for these top five taxa are then plotted for each of the 9 different taxa ranks. The unclassified count is always shown across all taxa ranks.

The total number of reads is approximated by dividing the number of unclassified reads by the percentage of the library that they account for. Note that this is only an approximation, and that kraken percentages don't always add to exactly 100%.

The category "Other" shows the difference between the above total read count and the sum of the read counts in the top 5 taxa shown + unclassified. This should cover all taxa not in the top 5, +/- any rounding errors.

Note that any taxon that does not exactly fit a taxon rank (eg. - or G2) is ignored.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

VARIANTS: Bowtie 2

This section of the report shows Bowtie 2 mapping results for reads after adapter trimming and quality trimming.DOI: 10.1038/nmeth.1923; 10.1038/nmeth.3317; 10.1038/s41587-019-0201-4.

Paired-end alignments

This plot shows the number of reads aligning to the reference in different ways.

Please note that single mate alignment counts are halved to tally with pair counts properly.

There are 6 possible types of alignment:

PE mapped uniquely: Pair has only one occurence in the reference genome.
PE mapped discordantly uniquely: Pair has only one occurence but not in proper pair.
PE one mate mapped uniquely: One read of a pair has one occurence.
PE multimapped: Pair has multiple occurence.
PE one mate multimapped: One read of a pair has multiple occurence.
PE neither mate aligned: Pair has no occurence.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

VARIANTS: SAMTools (raw)

Samtools This section of the report shows SAMTools counts/statistics after mapping with Bowtie 2.DOI: 10.1093/bioinformatics/btp352.

Samtools Flagstat

This module parses the output from samtools flagstat. All numbers in millions.

loading..

VARIANTS: SAMTools (iVar)

Samtools This section of the report shows SAMTools counts/statistics after primer sequence removal with iVar.DOI: 10.1093/bioinformatics/btp352.

Samtools Flagstat

This module parses the output from samtools flagstat. All numbers in millions.

loading..

VARIANTS: mosdepth

VARIANTS: mosdepth This section of the report shows genome-wide coverage metrics generated by mosdepth.DOI: 10.1093/bioinformatics/btx699.

Cumulative coverage distribution

Proportion of bases in the reference genome with, at least, a given depth of coverage

For a set of DNA or RNA reads mapped to a reference sequence, such as a genome or transcriptome, the depth of coverage at a given base position is the number of high-quality reads that map to the reference at that position, while the breadth of coverage is the fraction of the reference sequence to which reads have been mapped with at least a given depth of coverage (Sims et al. 2014).

Defining coverage breadth in terms of coverage depth is useful, because sequencing experiments typically require a specific minimum depth of coverage over the region of interest (Sims et al. 2014), so the extent of the reference sequence that is amenable to analysis is constrained to lie within regions that have sufficient depth. With inadequate sequencing breadth, it can be difficult to distinguish the absence of a biological feature (such as a gene) from a lack of data (Green 2007).

For increasing coverage depths (1×, 2×, …, N×), coverage breadth is calculated as the percentage of the reference sequence that is covered by at least that number of reads, then plots coverage breadth (y-axis) against coverage depth (x-axis). This plot shows the relationship between sequencing depth and breadth for each read dataset, which can be used to gauge, for example, the likely effect of a minimum depth filter on the fraction of a genome available for analysis.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Coverage distribution

Proportion of bases in the reference genome with a given depth of coverage

For a set of DNA or RNA reads mapped to a reference sequence, such as a genome or transcriptome, the depth of coverage at a given base position is the number of high-quality reads that map to the reference at that position (Sims et al. 2014).

Bases of a reference sequence (y-axis) are groupped by their depth of coverage (0×, 1×, …, N×) (x-axis). This plot shows the frequency of coverage depths relative to the reference sequence for each read dataset, which provides an indirect measure of the level and variation of coverage depth in the corresponding sequenced sample.

If reads are randomly distributed across the reference sequence, this plot should resemble a Poisson distribution (Lander & Waterman 1988), with a peak indicating approximate depth of coverage, and more uniform coverage depth being reflected in a narrower spread. The optimal level of coverage depth depends on the aims of the experiment, though it should at minimum be sufficiently high to adequately address the biological question; greater uniformity of coverage is generally desirable, because it increases breadth of coverage for a given depth of coverage, allowing equivalent results to be achieved at a lower sequencing depth (Sampson et al. 2011; Sims et al. 2014). However, it is difficult to achieve uniform coverage depth in practice, due to biases introduced during sample preparation (van Dijk et al. 2014), sequencing (Ross et al. 2013) and read mapping (Sims et al. 2014).

This plot may include a small peak for regions of the reference sequence with zero depth of coverage. Such regions may be absent from the given sample (due to a deletion or structural rearrangement), present in the sample but not successfully sequenced (due to bias in sequencing or preparation), or sequenced but not successfully mapped to the reference (due to the choice of mapping algorithm, the presence of repeat sequences, or mismatches caused by variants or sequencing errors). Related factors cause most datasets to contain some unmapped reads (Sims et al. 2014).

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Average coverage per contig

Average coverage per contig or chromosome

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

VARIANTS: Total variants (iVar)

is calculated from the total number of variants called by iVar.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

VARIANTS: BCFTools

Bcftools This section of the report shows BCFTools stats results for the called variants.DOI: 10.1093/gigascience/giab008.

Variant Substitution Types

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Variant Quality

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Indel Distribution

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

Variant depths

Read depth support distribution for called variants

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

ASSEMBLY: Cutadapt (primer trimming)

ASSEMBLY: Cutadapt (primer trimming) This section of the report shows Cutadapt results for reads after primer sequence trimming.DOI: 10.14806/ej.17.1.200.

Filtered Reads

This plot shows the number of reads (SE) / pairs (PE) removed by Cutadapt.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

ASSEMBLY: QUAST (SPAdes)

ASSEMBLY: QUAST (SPAdes) This section of the report shows QUAST results from SPAdes de novo assembly.DOI: 10.1093/bioinformatics/btt086.

Assembly Statistics

Showing ³²¹/₃₂₁ rows and ⁸/₈ columns.

Sample Name	N50 (Kbp)	L50 (K)	Largest contig (Kbp)	Length (Mbp)	Misassemblies	Mismatches/100kbp	Indels/100kbp	Genome Fraction
Ark_RSV_B400003_S208	0.8Kbp	0.0K	1.5Kbp	0.0Mbp	0.0	1383.73	22.50	58.2%
Ark_RSV_B400004_S209	1.3Kbp	0.0K	2.3Kbp	0.0Mbp	0.0	1625.58	17.86	73.0%
Ark_RSV_B400005_S210	3.7Kbp	0.0K	4.9Kbp	0.0Mbp	0.0	1662.61	15.69	83.5%
Ark_RSV_B400007_S211	1.5Kbp	0.0K	3.1Kbp	0.0Mbp	0.0	1641.46	0.00	55.9%
Ark_RSV_B400011_S281	1.3Kbp	0.0K	2.3Kbp	0.0Mbp	0.0	1554.78	17.97	71.9%
Ark_RSV_B400012_S282	1.9Kbp	0.0K	3.7Kbp	0.0Mbp	0.0	1524.84	14.88	87.9%
Ark_RSV_B400014_S283	0.9Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1397.23	20.70	62.3%
Ark_RSV_B400016_S284	2.0Kbp	0.0K	3.3Kbp	0.0Mbp	0.0	1631.55	16.40	79.6%
Ark_RSV_B400020_S285	1.4Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1226.83	9.09	71.7%
Ark_RSV_B400022_S286	1.4Kbp	0.0K	3.0Kbp	0.0Mbp	0.0	1533.95	16.76	78.1%
Ark_RSV_B400023_S287	1.3Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1473.47	9.33	69.8%
Ark_RSV_B400024_S288	1.6Kbp	0.0K	2.6Kbp	0.0Mbp	0.0	1547.84	9.67	67.3%
Ark_RSV_B400025_S289	0.7Kbp	0.0K	1.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400026_S290	1.0Kbp	0.0K	1.8Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400027_S291	1.1Kbp	0.0K	1.5Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400028_S292	0.8Kbp	0.0K	1.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400029_S293	1.1Kbp	0.0K	1.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400036_S294	2.8Kbp	0.0K	4.5Kbp	0.0Mbp	0.0	1485.47	14.56	89.9%
Ark_RSV_B400038_S295	1.4Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1258.28	13.25	49.5%
Ark_RSV_B400041_S296	2.1Kbp	0.0K	4.0Kbp	0.0Mbp	0.0	1724.14	18.84	69.5%
Ark_RSV_B400042_S297	1.5Kbp	0.0K	2.5Kbp	0.0Mbp	0.0	1217.57	13.84	93.2%
Ark_RSV_B400046_S298	0.8Kbp	0.0K	1.8Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400047_S299	1.0Kbp	0.0K	1.4Kbp	0.0Mbp	0.0	1326.80	19.23	67.7%
Ark_RSV_B400048_S300	1.7Kbp	0.0K	3.7Kbp	0.0Mbp	0.0	1392.88	26.96	72.8%
Ark_RSV_B400049_S301	1.0Kbp	0.0K	3.3Kbp	0.0Mbp	0.0	1600.14	25.53	75.9%
Ark_RSV_B400050_S302	1.2Kbp	0.0K	2.8Kbp	0.0Mbp	0.0	1675.93	23.17	84.5%
Ark_RSV_B400051_S303	2.0Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	1432.24	31.14	83.4%
Ark_RSV_B400052_S304	1.5Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1257.34	7.53	85.9%
Ark_RSV_B400059_S305	1.5Kbp	0.0K	2.6Kbp	0.0Mbp	0.0	1704.64	24.59	79.3%
Ark_RSV_B400060_S306	1.2Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1456.39	15.83	82.1%
Ark_RSV_B400062_S307	2.8Kbp	0.0K	5.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400064_S308	1.4Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1439.67	8.83	73.0%
Ark_RSV_B400066_S309	1.0Kbp	0.0K	1.5Kbp	0.0Mbp	0.0	1311.07	0.00	47.5%
Ark_RSV_B400067_S310	1.4Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1571.49	16.20	80.2%
Ark_RSV_B400068_S311	1.3Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	1554.40	18.18	72.1%
Ark_RSV_B400069_S312	1.1Kbp	0.0K	1.8Kbp	0.0Mbp	1.0	1217.66	35.81	72.4%
Ark_RSV_B400073_S313	1.5Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	1267.94	0.00	81.5%
Ark_RSV_B400074_S314	1.3Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1630.86	17.54	74.2%
Ark_RSV_B400076_S315	2.0Kbp	0.0K	2.5Kbp	0.0Mbp	0.0	1634.72	22.29	86.6%
Ark_RSV_B400079_S316	1.1Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1071.82	11.05	58.9%
Ark_RSV_B400083_S317	1.4Kbp	0.0K	3.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400084_S318	3.0Kbp	0.0K	4.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400087_S319	1.4Kbp	0.0K	3.9Kbp	0.0Mbp	0.0	1412.13	14.94	86.2%
Ark_RSV_B400088_S320	7.2Kbp	0.0K	7.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400091_S321	2.6Kbp	0.0K	3.4Kbp	0.0Mbp	0.0	1627.89	6.99	93.4%
Ark_RSV_B400094_S322	1.8Kbp	0.0K	4.2Kbp	0.0Mbp	0.0	1568.82	14.20	91.4%
Ark_RSV_B400095_S323	1.1Kbp	0.0K	1.6Kbp	0.0Mbp	0.0	1539.55	26.54	73.0%
Ark_RSV_B400096_S324	1.4Kbp	0.0K	3.0Kbp	0.0Mbp	0.0	1512.97	16.90	77.5%
Ark_RSV_B400099_S325	1.4Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1631.54	25.49	76.7%
Ark_RSV_B400100_S326	1.4Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	1369.14	17.67	73.0%
Ark_RSV_B400104_S327	1.0Kbp	0.0K	3.0Kbp	0.0Mbp	0.0	1761.25	0.00	3.3%
Ark_RSV_B400105_S328	1.6Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400106_S329	1.2Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1584.38	8.00	81.6%
Ark_RSV_B400107_S330	1.5Kbp	0.0K	2.4Kbp	0.0Mbp	0.0	1335.20	22.13	88.1%
Ark_RSV_B400111_S331	1.1Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1433.96	10.78	60.8%
Ark_RSV_B400116_S332	9.7Kbp	0.0K	9.7Kbp	0.0Mbp	0.0	252.82	6.83	95.7%
Ark_RSV_B400117_S333	0.9Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1670.34	15.76	41.6%
Ark_RSV_B400118_S334	9.5Kbp	0.0K	9.5Kbp	0.0Mbp	0.0	283.60	0.00	94.7%
Ark_RSV_B400119_S335	7.4Kbp	0.0K	7.4Kbp	0.0Mbp	0.0	183.97	0.00	89.0%
Ark_RSV_B400120_S336	2.0Kbp	0.0K	6.9Kbp	0.0Mbp	0.0	180.22	7.21	90.9%
Ark_RSV_B400125_S337	1.5Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	1467.21	8.84	74.1%
Ark_RSV_B400126_S338	0.8Kbp	0.0K	1.3Kbp	0.0Mbp	0.0	1358.72	10.70	61.2%
Ark_RSV_B400129_S339	1.2Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1269.79	8.70	75.1%
Ark_RSV_B400130_S340	1.3Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1411.70	17.11	76.6%
Ark_RSV_B400131_S341	9.0Kbp	0.0K	9.0Kbp	0.0Mbp	0.0	252.60	21.65	90.8%
Ark_RSV_B400132_S342	4.0Kbp	0.0K	4.5Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400133_S343	1.3Kbp	0.0K	2.8Kbp	0.0Mbp	0.0	1334.56	8.34	78.2%
Ark_RSV_B400134_S344	1.8Kbp	0.0K	3.1Kbp	0.0Mbp	0.0	1563.49	10.56	62.0%
Ark_RSV_B400135_S345	1.4Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1330.54	40.32	80.9%
Ark_RSV_B400136_S346	1.2Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1330.90	17.40	75.0%
Ark_RSV_B400137_S347	2.8Kbp	0.0K	6.4Kbp	0.0Mbp	0.0	272.42	0.00	90.7%
Ark_RSV_B400138_S348	3.9Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400145_S349	1.2Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1258.34	9.53	68.7%
Ark_RSV_B400146_S350	1.4Kbp	0.0K	3.3Kbp	0.0Mbp	0.0	1781.47	25.45	76.1%
Ark_RSV_B400147_S351	1.9Kbp	0.0K	3.8Kbp	0.0Mbp	0.0	207.96	14.85	88.2%
Ark_RSV_B400148_S352	1.0Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1152.71	8.94	73.0%
Ark_RSV_B400149_S353	1.1Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1484.03	19.66	66.6%
Ark_RSV_B400156_S354	1.5Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1408.45	7.96	82.0%
Ark_RSV_B400157_S355	3.9Kbp	0.0K	5.2Kbp	0.0Mbp	0.0	4672.90	0.00	0.7%
Ark_RSV_B400158_S356	1.2Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	1544.36	19.67	66.1%
Ark_RSV_B400160_S357	0.7Kbp	0.0K	1.0Kbp	0.0Mbp	0.0	1319.62	17.14	37.2%
Ark_RSV_B400161_S358	8.4Kbp	0.0K	8.4Kbp	0.0Mbp	0.0	4672.90	0.00	0.7%
Ark_RSV_B400162_S359	7.4Kbp	0.0K	7.4Kbp	0.0Mbp	0.0	166.29	0.00	94.6%
Ark_RSV_B400169_S361	3.8Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_B400170_S362	9.7Kbp	0.0K	9.7Kbp	0.0Mbp	0.0	228.48	13.44	97.2%
Ark_RSV_B400171_S363	1.3Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	422.81	0.00	56.3%
Ark_RSV_B400174_S364	1.4Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1686.07	8.56	75.4%
Ark_RSV_B400178_S365	1.9Kbp	0.0K	4.2Kbp	0.0Mbp	0.0	239.84	0.00	92.2%
Ark_RSV_B400179_S366	1.2Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1519.68	16.61	77.7%
Ark_RSV_B400182_S367	1.2Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	1538.46	29.40	66.8%
Ark_RSV_B400185_S368	1.2Kbp	0.0K	1.8Kbp	0.0Mbp	1.0	1492.68	19.39	67.5%
Ark_RSV_B400186_S369	1.2Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1567.91	0.00	63.6%
Ark_RSV_B400188_S371	1.9Kbp	0.0K	4.3Kbp	0.0Mbp	0.0	171.20	21.40	61.3%
Ark_RSV_B400193_S373	1.2Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1762.94	9.38	68.1%
Ark_RSV_B400198_S374	1.7Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	223.18	17.17	38.2%
Ark_RSV_B400200_S375	1.5Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	1421.93	17.89	73.3%
Ark_RSV_B400202_S376	7.6Kbp	0.0K	7.6Kbp	0.0Mbp	0.0	269.58	14.98	87.5%
Ark_RSV_B400203_S377	0.7Kbp	0.0K	1.3Kbp	0.0Mbp	0.0	1875.87	19.96	31.8%
Ark_RSV_B400204_S378	1.7Kbp	0.0K	3.3Kbp	0.0Mbp	0.0	1499.43	15.15	86.1%
Ark_RSV_B400218_S379	1.1Kbp	0.0K	1.1Kbp	0.0Mbp	0.0	489.30	0.00	10.7%
Ark_RSV_B400221_S380	1.5Kbp	0.0K	3.2Kbp	0.0Mbp	0.0	243.01	7.59	85.3%
Ark_RSV_B400225_S382	1.4Kbp	0.0K	2.8Kbp	0.0Mbp	0.0	1533.84	7.91	82.5%
Ark_RSV_B400226_S383	2.1Kbp	0.0K	4.2Kbp	0.0Mbp	0.0	231.85	0.00	73.2%
Ark_RSV_BV00001_S1	0.9Kbp	0.0K	1.5Kbp	0.0Mbp	0.0	1638.94	0.00	26.4%
Ark_RSV_BV00002_S2	1.7Kbp	0.0K	4.7Kbp	0.0Mbp	0.0	1329.79	8.87	73.9%
Ark_RSV_BV00022_S6	2.0Kbp	0.0K	3.8Kbp	0.0Mbp	0.0	1491.60	28.01	93.6%
Ark_RSV_BV00023_S7	1.6Kbp	0.0K	3.6Kbp	0.0Mbp	0.0	259.76	0.00	84.8%
Ark_RSV_BV00025_S8	2.4Kbp	0.0K	7.3Kbp	0.0Mbp	0.0	284.42	6.77	95.8%
Ark_RSV_BV00026_S9	1.0Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1488.75	22.06	59.4%
Ark_RSV_BV00037_S10	9.0Kbp	0.0K	9.0Kbp	0.0Mbp	0.0	287.79	7.19	90.7%
Ark_RSV_BV00038_S11	1.1Kbp	0.0K	1.5Kbp	0.0Mbp	0.0	1360.41	20.30	32.3%
Ark_RSV_BV00040_S12	1.2Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1464.66	10.61	61.4%
Ark_RSV_BV00080_S14	1.2Kbp	0.0K	2.6Kbp	0.0Mbp	0.0	674.29	8.22	79.1%
Ark_RSV_BV00081_S15	1.6Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1291.96	10.17	64.4%
Ark_RSV_BV00086_S17	2.7Kbp	0.0K	4.3Kbp	0.0Mbp	0.0	287.09	0.00	77.6%
Ark_RSV_BV00088_S18	1.3Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1175.39	27.55	70.5%
Ark_RSV_BV00143_S26	1.3Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1417.12	9.32	70.2%
Ark_RSV_BV00150_S28	1.4Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	1355.88	33.48	77.9%
Ark_RSV_BV00157_S29	1.6Kbp	0.0K	3.3Kbp	0.0Mbp	0.0	1716.30	25.24	77.5%
Ark_RSV_BV00194_S31	2.4Kbp	0.0K	6.2Kbp	0.0Mbp	0.0	304.10	13.82	94.5%
Ark_RSV_BV00195_S32	1.2Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1492.17	16.22	80.3%
Ark_RSV_BV00211_S33	1.2Kbp	0.0K	2.6Kbp	0.0Mbp	0.0	1423.73	8.47	77.3%
Ark_RSV_BV00212_S34	2.8Kbp	0.0K	3.8Kbp	0.0Mbp	0.0	582.00	7.97	82.2%
Ark_RSV_BV00213_S35	1.9Kbp	0.0K	2.4Kbp	0.0Mbp	0.0	759.90	12.26	53.0%
Ark_RSV_BV00216_S37	1.6Kbp	0.0K	2.8Kbp	0.0Mbp	0.0	1370.95	17.58	74.5%
Ark_RSV_BV00223_S38	1.4Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1427.34	8.65	75.4%
Ark_RSV_BV00226_S39	1.6Kbp	0.0K	3.3Kbp	0.0Mbp	0.0	196.21	0.00	76.8%
Ark_RSV_BV00247_S40	2.0Kbp	0.0K	4.5Kbp	0.0Mbp	0.0	237.74	8.81	74.1%
Ark_RSV_BV00263_S41	1.3Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1464.56	19.53	67.1%
Ark_RSV_BV00267_S42	1.9Kbp	0.0K	3.4Kbp	0.0Mbp	0.0	312.78	10.09	64.9%
Ark_RSV_BV00268_S43	3.2Kbp	0.0K	5.9Kbp	0.0Mbp	0.0	298.04	7.10	92.3%
Ark_RSV_BV00271_S44	3.0Kbp	0.0K	4.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00287_S45	1.5Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1078.42	17.25	75.6%
Ark_RSV_BV00288_S46	2.5Kbp	0.0K	4.9Kbp	0.0Mbp	0.0	699.15	7.36	88.6%
Ark_RSV_BV00301_S48	0.8Kbp	0.0K	1.0Kbp	0.0Mbp	0.0	1408.45	0.00	15.8%
Ark_RSV_BV00305_S49	4.3Kbp	0.0K	5.5Kbp	0.0Mbp	0.0	719.13	13.57	95.8%
Ark_RSV_BV00310_S50	1.3Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1705.16	18.04	71.5%
Ark_RSV_BV00311_S51	1.1Kbp	0.0K	1.3Kbp	0.0Mbp	0.0	1654.89	17.24	38.0%
Ark_RSV_BV00339_S53	1.2Kbp	0.0K	4.4Kbp	0.0Mbp	0.0	279.79	10.36	62.9%
Ark_RSV_BV00356_S55	1.5Kbp	0.0K	3.3Kbp	0.0Mbp	0.0	1538.62	40.49	63.9%
Ark_RSV_BV00358_S56	1.8Kbp	0.0K	4.6Kbp	0.0Mbp	0.0	273.57	7.01	92.6%
Ark_RSV_BV00362_S57	3.2Kbp	0.0K	3.3Kbp	0.0Mbp	0.0	1480.78	15.75	83.1%
Ark_RSV_BV00367_S58	7.2Kbp	0.0K	7.2Kbp	0.0Mbp	0.0	278.60	8.44	77.6%
Ark_RSV_BV00378_S60	7.7Kbp	0.0K	7.7Kbp	0.0Mbp	0.0	282.66	6.89	94.7%
Ark_RSV_BV00387_S62	3.1Kbp	0.0K	4.4Kbp	0.0Mbp	0.0	284.25	0.00	94.5%
Ark_RSV_BV00422_S65	0.9Kbp	0.0K	1.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00436_S66	1.2Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1290.32	0.00	69.9%
Ark_RSV_BV00438_S67	1.7Kbp	0.0K	2.8Kbp	0.0Mbp	0.0	1475.14	18.21	71.9%
Ark_RSV_BV00439_S68	3.2Kbp	0.0K	3.5Kbp	0.0Mbp	0.0	1577.06	16.34	80.1%
Ark_RSV_BV00455_S69	8.7Kbp	0.0K	8.7Kbp	0.0Mbp	0.0	204.24	7.04	93.0%
Ark_RSV_BV00470_S70	9.6Kbp	0.0K	9.6Kbp	0.0Mbp	0.0	182.17	13.49	96.8%
Ark_RSV_BV00476_S71	1.2Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1538.60	26.99	71.9%
Ark_RSV_BV00482_S73	9.2Kbp	0.0K	9.2Kbp	0.0Mbp	0.0	234.06	7.09	92.4%
Ark_RSV_BV00487_S75	2.1Kbp	0.0K	2.9Kbp	0.0Mbp	0.0	693.32	15.41	84.7%
Ark_RSV_BV00521_S79	1.0Kbp	0.0K	1.9Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00539_S82	1.9Kbp	0.0K	4.4Kbp	0.0Mbp	0.0	319.54	0.00	75.9%
Ark_RSV_BV00567_S86	0.9Kbp	0.0K	1.5Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00580_S87	1.5Kbp	0.0K	3.0Kbp	0.0Mbp	0.0	1195.67	8.08	81.1%
Ark_RSV_BV00596_S88	1.1Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1196.05	0.00	65.4%
Ark_RSV_BV00600_S89	2.5Kbp	0.0K	4.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00601_S90	1.2Kbp	0.0K	2.4Kbp	0.0Mbp	0.0	776.76	10.64	61.5%
Ark_RSV_BV00639_S91	1.2Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1646.80	20.21	64.8%
Ark_RSV_BV00642_S92	4.1Kbp	0.0K	4.3Kbp	0.0Mbp	0.0	684.13	20.73	93.6%
Ark_RSV_BV00648_S93	1.1Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	1347.21	21.91	59.5%
Ark_RSV_BV00653_S94	3.2Kbp	0.0K	4.3Kbp	0.0Mbp	0.0	270.90	0.00	84.7%
Ark_RSV_BV00654_S95	1.4Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1644.36	26.24	74.0%
Ark_RSV_BV00658_S96	7.7Kbp	0.0K	7.7Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00670_S97	1.0Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1606.10	20.08	65.3%
Ark_RSV_BV00678_S98	0.9Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	838.52	12.70	51.2%
Ark_RSV_BV00679_S99	1.0Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1235.57	40.51	64.7%
Ark_RSV_BV00682_S100	1.7Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	1270.69	33.44	39.2%
Ark_RSV_BV00684_S101	2.1Kbp	0.0K	3.2Kbp	0.0Mbp	0.0	697.20	8.11	80.8%
Ark_RSV_BV00688_S102	1.9Kbp	0.0K	4.3Kbp	0.0Mbp	0.0	153.21	7.30	89.5%
Ark_RSV_BV00697_S103	9.2Kbp	0.0K	9.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00713_S104	7.1Kbp	0.0K	7.1Kbp	0.0Mbp	0.0	204.39	0.00	76.9%
Ark_RSV_BV00726_S105	9.7Kbp	0.0K	9.7Kbp	0.0Mbp	0.0	241.13	0.00	97.2%
Ark_RSV_BV00743_S106	1.0Kbp	0.0K	3.2Kbp	0.0Mbp	0.0	1582.28	24.98	78.3%
Ark_RSV_BV00749_S107	1.1Kbp	0.0K	2.4Kbp	0.0Mbp	0.0	1269.48	8.76	74.5%
Ark_RSV_BV00760_S109	2.8Kbp	0.0K	5.3Kbp	0.0Mbp	0.0	719.59	15.31	86.0%
Ark_RSV_BV00766_S110	1.7Kbp	0.0K	3.0Kbp	0.0Mbp	0.0	1604.32	7.94	82.2%
Ark_RSV_BV00768_S111	1.2Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1146.94	14.43	89.5%
Ark_RSV_BV00772_S112	1.2Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1196.49	21.95	59.6%
Ark_RSV_BV00773_S113	1.2Kbp	0.0K	3.2Kbp	0.0Mbp	0.0	1358.26	35.28	73.9%
Ark_RSV_BV00780_S114	4.2Kbp	0.0K	5.3Kbp	0.0Mbp	0.0	713.21	14.41	90.9%
Ark_RSV_BV00797_S115	7.2Kbp	0.0K	7.2Kbp	0.0Mbp	1.0	192.44	0.00	85.1%
Ark_RSV_BV00809_S116	1.7Kbp	0.0K	3.8Kbp	0.0Mbp	0.0	1561.87	16.10	81.3%
Ark_RSV_BV00818_S117	1.2Kbp	0.0K	3.2Kbp	0.0Mbp	0.0	663.87	7.63	85.5%
Ark_RSV_BV00823_S118	2.1Kbp	0.0K	3.2Kbp	0.0Mbp	0.0	333.02	0.00	89.5%
Ark_RSV_BV00847_S120	2.7Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	448.91	0.00	30.7%
Ark_RSV_BV00855_S121	1.4Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1561.64	15.69	82.6%
Ark_RSV_BV00857_S122	11.6Kbp	0.0K	11.6Kbp	0.0Mbp	0.0	222.52	0.00	97.2%
Ark_RSV_BV00875_S123	1.2Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1513.02	17.59	73.7%
Ark_RSV_BV00888_S124	5.9Kbp	0.0K	5.9Kbp	0.0Mbp	0.0	208.65	9.07	72.2%
Ark_RSV_BV00901_S126	0.9Kbp	0.0K	1.2Kbp	0.0Mbp	0.0	1392.85	11.42	57.4%
Ark_RSV_BV00906_S127	1.9Kbp	0.0K	6.4Kbp	0.0Mbp	0.0	182.09	0.00	86.3%
Ark_RSV_BV00920_S128	2.8Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00927_S129	1.2Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1192.64	0.00	70.7%
Ark_RSV_BV00930_S130	3.0Kbp	0.0K	3.9Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV00936_S131	1.5Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	354.56	0.00	45.8%
Ark_RSV_BV00940_S133	1.4Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1597.03	18.57	70.5%
Ark_RSV_BV00951_S134	8.4Kbp	0.0K	8.4Kbp	0.0Mbp	0.0	178.93	0.00	91.5%
Ark_RSV_BV00976_S135	1.1Kbp	0.0K	1.5Kbp	0.0Mbp	0.0	1447.82	20.11	65.2%
Ark_RSV_BV00980_S136	1.9Kbp	0.0K	5.5Kbp	0.0Mbp	0.0	220.04	7.86	83.3%
Ark_RSV_BV00999_S138	1.2Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1532.53	25.68	75.7%
Ark_RSV_BV01000_S139	1.2Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	1476.87	8.54	76.1%
Ark_RSV_BV01006_S140	9.7Kbp	0.0K	9.7Kbp	0.0Mbp	0.0	169.83	0.00	100.0%
Ark_RSV_BV01008_S141	7.1Kbp	0.0K	7.1Kbp	0.0Mbp	0.0	196.10	0.00	73.5%
Ark_RSV_BV01022_S142	3.1Kbp	0.0K	5.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01049_S143	9.5Kbp	0.0K	9.5Kbp	0.0Mbp	0.0	169.68	0.00	96.5%
Ark_RSV_BV01067_S144	1.4Kbp	0.0K	5.7Kbp	0.0Mbp	0.0	151.41	7.57	86.5%
Ark_RSV_BV01068_S145	2.6Kbp	0.0K	4.0Kbp	0.0Mbp	0.0	1210.03	13.30	97.4%
Ark_RSV_BV01076_S146	0.8Kbp	0.0K	1.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01083_S147	3.9Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01088_S148	3.1Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01094_S149	5.2Kbp	0.0K	5.3Kbp	0.0Mbp	0.0	230.21	6.77	96.5%
Ark_RSV_BV01097_S150	2.4Kbp	0.0K	3.4Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01100_S151	8.8Kbp	0.0K	8.8Kbp	0.0Mbp	0.0	149.98	0.00	91.7%
Ark_RSV_BV01116_S153	1.2Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1521.68	28.71	68.0%
Ark_RSV_BV01130_S154	9.5Kbp	0.0K	9.5Kbp	0.0Mbp	0.0	170.96	0.00	95.8%
Ark_RSV_BV01145_S155	1.5Kbp	0.0K	3.0Kbp	0.0Mbp	0.0	1546.53	26.21	75.0%
Ark_RSV_BV01165_S156	3.1Kbp	0.0K	3.8Kbp	0.0Mbp	0.0	186.55	0.00	91.3%
Ark_RSV_BV01175_S158	2.1Kbp	0.0K	5.1Kbp	0.0Mbp	0.0	225.77	7.28	89.6%
Ark_RSV_BV01195_S159	1.6Kbp	0.0K	3.1Kbp	0.0Mbp	0.0	189.12	7.27	89.5%
Ark_RSV_BV01216_S160	1.2Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1422.43	9.55	68.6%
Ark_RSV_BV01218_S161	9.1Kbp	0.0K	9.1Kbp	0.0Mbp	0.0	170.86	6.83	95.6%
Ark_RSV_BV01235_S162	3.8Kbp	0.0K	5.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01247_S163	3.8Kbp	0.0K	5.1Kbp	0.0Mbp	0.0	227.42	0.00	88.9%
Ark_RSV_BV01355_S165	9.0Kbp	0.0K	9.0Kbp	0.0Mbp	0.0	193.73	6.92	94.4%
Ark_RSV_BV01359_S166	1.1Kbp	0.0K	2.8Kbp	0.0Mbp	0.0	1198.40	0.00	64.0%
Ark_RSV_BV01402_S167	0.6Kbp	0.0K	1.1Kbp	0.0Mbp	0.0	1116.69	27.92	23.5%
Ark_RSV_BV01406_S168	1.6Kbp	0.0K	3.3Kbp	0.0Mbp	1.0	1657.74	17.00	76.6%
Ark_RSV_BV01408_S169	9.0Kbp	0.0K	9.0Kbp	0.0Mbp	0.0	179.69	0.00	91.2%
Ark_RSV_BV01413_S170	3.8Kbp	0.0K	5.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01416_S171	1.2Kbp	0.0K	4.5Kbp	0.0Mbp	0.0	1244.03	7.82	83.7%
Ark_RSV_BV01418_S172	7.8Kbp	0.0K	7.8Kbp	0.0Mbp	0.0	211.50	0.00	95.4%
Ark_RSV_BV01428_S173	1.3Kbp	0.0K	1.7Kbp	0.0Mbp	0.0	1653.71	9.04	71.4%
Ark_RSV_BV01430_S174	1.1Kbp	0.0K	3.2Kbp	0.0Mbp	0.0	1304.35	28.36	68.7%
Ark_RSV_BV01431_S175	1.6Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1552.53	25.88	74.9%
Ark_RSV_BV01443_S176	1.4Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1293.81	8.19	77.9%
Ark_RSV_BV01467_S177	3.8Kbp	0.0K	5.5Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01486_S178	2.4Kbp	0.0K	4.4Kbp	0.0Mbp	0.0	1503.51	24.51	79.7%
Ark_RSV_BV01515_S179	1.1Kbp	0.0K	1.4Kbp	0.0Mbp	0.0	354.42	0.00	24.0%
Ark_RSV_BV01525_S181	1.5Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	1460.98	18.15	72.2%
Ark_RSV_BV01569_S182	9.2Kbp	0.0K	9.2Kbp	0.0Mbp	0.0	234.45	20.69	93.9%
Ark_RSV_BV01606_S183	2.1Kbp	0.0K	3.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01609_S184	3.1Kbp	0.0K	4.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01688_S185	8.3Kbp	0.0K	8.3Kbp	0.0Mbp	0.0	111.14	0.00	88.4%
Ark_RSV_BV01766_S188	1.4Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1419.45	8.87	73.5%
Ark_RSV_BV01767_S189	3.8Kbp	0.0K	5.5Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01852_S191	3.2Kbp	0.0K	5.4Kbp	0.0Mbp	0.0	289.94	0.00	90.3%
Ark_RSV_BV01854_S193	3.1Kbp	0.0K	4.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV01919_S194	1.9Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	1349.74	28.12	92.5%
Ark_RSV_BV01958_S197	7.1Kbp	0.0K	7.1Kbp	0.0Mbp	0.0	217.09	0.00	90.6%
Ark_RSV_BV02099_S199	5.1Kbp	0.0K	5.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02196_S200	3.5Kbp	0.0K	5.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02588_S201	2.6Kbp	0.0K	3.4Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02627_S203	1.3Kbp	0.0K	3.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02693_S204	9.0Kbp	0.0K	9.0Kbp	0.0Mbp	0.0	210.68	0.00	96.4%
Ark_RSV_BV02702_S205	7.6Kbp	0.0K	7.6Kbp	0.0Mbp	0.0	186.72	0.00	87.7%
Ark_RSV_BV02718_S206	9.2Kbp	0.0K	9.2Kbp	0.0Mbp	0.0	184.86	7.11	92.2%
Ark_RSV_BV02735_S212	4.0Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02772_S214	1.3Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	358.62	0.00	60.3%
Ark_RSV_BV02773_S215	1.2Kbp	0.0K	2.7Kbp	0.0Mbp	0.0	1402.63	9.61	67.5%
Ark_RSV_BV02774_S216	7.2Kbp	0.0K	7.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02792_S217	3.9Kbp	0.0K	4.4Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02794_S218	1.2Kbp	0.0K	1.4Kbp	0.0Mbp	0.0	1272.02	28.27	69.1%
Ark_RSV_BV02829_S219	1.4Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1350.34	8.28	78.3%
Ark_RSV_BV02834_S220	3.8Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02852_S221	0.8Kbp	0.0K	2.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02853_S222	7.5Kbp	0.0K	7.5Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02854_S223	2.7Kbp	0.0K	3.5Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02857_S224	3.8Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02863_S225	9.1Kbp	0.0K	9.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02885_S226	1.9Kbp	0.0K	3.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02900_S227	3.1Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02910_S229	0.9Kbp	0.0K	2.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02913_S230	0.9Kbp	0.0K	1.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02938_S231	1.2Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1356.65	24.52	79.8%
Ark_RSV_BV02948_S233	2.5Kbp	0.0K	3.8Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02954_S234	3.1Kbp	0.0K	4.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02968_S236	4.1Kbp	0.0K	5.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02972_S237	1.5Kbp	0.0K	3.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02975_S238	1.4Kbp	0.0K	3.0Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02977_S239	1.7Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1447.33	17.87	73.0%
Ark_RSV_BV02991_S241	2.3Kbp	0.0K	4.5Kbp	0.0Mbp	0.0	324.46	0.00	78.8%
Ark_RSV_BV02992_S242	1.4Kbp	0.0K	3.2Kbp	0.0Mbp	0.0	1463.29	8.27	79.2%
Ark_RSV_BV02995_S243	7.4Kbp	0.0K	7.4Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV02996_S244	1.2Kbp	0.0K	2.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03005_S246	1.0Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1631.25	11.49	57.0%
Ark_RSV_BV03008_S247	0.9Kbp	0.0K	1.6Kbp	0.0Mbp	0.0	1752.25	30.47	43.0%
Ark_RSV_BV03010_S248	1.5Kbp	0.0K	2.1Kbp	0.0Mbp	0.0	1418.18	18.66	70.2%
Ark_RSV_BV03011_S249	4.0Kbp	0.0K	4.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03020_S250	1.2Kbp	0.0K	2.8Kbp	0.0Mbp	0.0	1452.44	0.00	77.9%
Ark_RSV_BV03024_S252	1.1Kbp	0.0K	1.4Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03025_S253	1.4Kbp	0.0K	2.6Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03032_S254	3.0Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03039_S255	3.6Kbp	0.0K	3.9Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03040_S256	3.0Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03041_S257	1.2Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1747.60	35.19	55.5%
Ark_RSV_BV03048_S258	1.8Kbp	0.0K	3.4Kbp	0.0Mbp	0.0	382.18	7.64	83.8%
Ark_RSV_BV03049_S259	0.7Kbp	0.0K	1.0Kbp	0.0Mbp	0.0	1708.21	0.00	37.6%
Ark_RSV_BV03055_S260	2.9Kbp	0.0K	4.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03061_S261	1.5Kbp	0.0K	2.0Kbp	0.0Mbp	0.0	1409.37	8.15	80.1%
Ark_RSV_BV03068_S262	2.0Kbp	0.0K	2.9Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03073_S263	6.1Kbp	0.0K	6.1Kbp	0.0Mbp	0.0	1456.62	18.09	72.4%
Ark_RSV_BV03082_S264	1.4Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1497.75	0.00	78.1%
Ark_RSV_BV03104_S265	7.6Kbp	0.0K	7.6Kbp	0.0Mbp	0.0	193.77	0.00	94.6%
Ark_RSV_BV03105_S266	1.6Kbp	0.0K	2.3Kbp	0.0Mbp	0.0	1361.64	23.08	28.3%
Ark_RSV_BV03107_S268	1.2Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1716.78	28.45	68.2%
Ark_RSV_BV03108_S269	1.2Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1582.63	27.60	70.7%
Ark_RSV_BV03109_S270	0.8Kbp	0.0K	1.0Kbp	0.0Mbp	1.0	1716.17	0.00	29.8%
Ark_RSV_BV03110_S271	3.0Kbp	0.0K	3.6Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03111_S272	1.2Kbp	0.0K	1.8Kbp	0.0Mbp	0.0	1620.46	9.37	69.5%
Ark_RSV_BV03155_S273	2.2Kbp	0.0K	3.7Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03156_S274	3.0Kbp	0.0K	5.2Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03157_S275	1.1Kbp	0.0K	1.9Kbp	0.0Mbp	0.0	1364.09	9.15	70.9%
Ark_RSV_BV03158_S276	4.1Kbp	0.0K	4.3Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03159_S277	1.1Kbp	0.0K	2.2Kbp	0.0Mbp	0.0	1741.57	18.73	69.1%
Ark_RSV_BV03160_S278	1.6Kbp	0.0K	5.1Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03161_S279	3.2Kbp	0.0K	4.4Kbp	0.0Mbp	-	-	-	-%
Ark_RSV_BV03162_S280	1.9Kbp	0.0K	2.6Kbp	0.0Mbp	0.0	140.86	0.00	74.2%

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order.

Sort	Group	Column	Description	ID	Scale
\|\|	QUAST	N50 (Kbp)	N50 is the contig length such that using longer or equal length contigs produces half (50%) of the bases of the assembly.	`N50`	None
\|\|	QUAST	L50 (K)	L50 is the number of contigs larger than N50, i.e. the minimum number of contigs comprising 50% of the total assembly length.	`L50`	None
\|\|	QUAST	Largest contig (Kbp)	The size of the largest contig of the assembly	`Largest contig`	None
\|\|	QUAST	Length (Mbp)	The total number of bases in the assembly.	`Total length`	None
\|\|	QUAST	Misassemblies	The number of positions in the assembled contigs where the left flanking sequence aligns over 1 kbp away from the right flanking sequence on the reference (relocation) or they overlap on more than 1 kbp (relocation) or flanking sequences align on different strands (inversion) or different chromosomes (translocation).	`# misassemblies`	None
\|\|	QUAST	Mismatches/100kbp	The number of mismatches per 100 kbp	`# mismatches per 100 kbp`	None
\|\|	QUAST	Indels/100kbp	The number of indels per 100 kbp	`# indels per 100 kbp`	None
\|\|	QUAST	Genome Fraction	The total number of aligned bases in the reference, divided by the genome size.	`Genome fraction (%)`	None

Number of Contigs

This plot shows the number of contigs found for each assembly, broken down by length.

Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).

nf-core/viralrecon Software Versions

are collected at run time from the software output.

Process Name	Software	Version
`BANDAGE_IMAGE`	`bandage`	`0.8.1`
`BCFTOOLS_CONSENSUS`	`bcftools`	`1.16`
`BCFTOOLS_FILTER`	`bcftools`	`1.16`
`BCFTOOLS_SORT`	`bcftools`	`1.16`
`BCFTOOLS_STATS`	`bcftools`	`1.16`
`BEDTOOLS_GETFASTA`	`bedtools`	`2.30.0`
`BEDTOOLS_MASKFASTA`	`bedtools`	`2.30.0`
`BEDTOOLS_MERGE`	`bedtools`	`2.30.0`
`BOWTIE2_ALIGN`	`bowtie2`	`2.4.4`
	`pigz`	`2.6`
	`samtools`	`1.16.1`
`BOWTIE2_BUILD`	`bowtie2`	`2.4.4`
`COLLAPSE_PRIMERS`	`python`	`3.9.5`
`CUSTOM_DUMPSOFTWAREVERSIONS`	`python`	`3.11.0`
	`yaml`	`6.0`
`CUSTOM_GETCHROMSIZES`	`getchromsizes`	`1.16.1`
`CUTADAPT`	`cutadapt`	`4.2`
`FASTP`	`fastp`	`0.23.2`
`FASTQC`	`fastqc`	`0.11.9`
`FASTQC_RAW`	`fastqc`	`0.11.9`
`FASTQC_TRIM`	`fastqc`	`0.11.9`
`GUNZIP_SCAFFOLDS`	`gunzip`	`1.10`
`IVAR_TRIM`	`ivar`	`1.4`
`IVAR_VARIANTS`	`ivar`	`1.4`
`IVAR_VARIANTS_TO_VCF`	`python`	`3.9.12`
`KRAKEN2_KRAKEN2`	`kraken2`	`2.1.2`
	`pigz`	`2.6`
`MAKE_BED_MASK`	`python`	`3.9.5`
	`samtools`	`1.14`
`MOSDEPTH_AMPLICON`	`mosdepth`	`0.3.3`
`MOSDEPTH_GENOME`	`mosdepth`	`0.3.3`
`PICARD_COLLECTMULTIPLEMETRICS`	`picard`	`3.0.0`
`PLOT_MOSDEPTH_REGIONS_AMPLICON`	`r-base`	`4.0.3`
`PLOT_MOSDEPTH_REGIONS_GENOME`	`r-base`	`4.0.3`
`QUAST`	`quast`	`5.2.0`
`RENAME_FASTA_HEADER`	`sed`	`4.7`
`SAMPLESHEET_CHECK`	`python`	`3.9.5`
`SAMTOOLS_FLAGSTAT`	`samtools`	`1.16.1`
`SAMTOOLS_IDXSTATS`	`samtools`	`1.16.1`
`SAMTOOLS_INDEX`	`samtools`	`1.16.1`
`SAMTOOLS_SORT`	`samtools`	`1.16.1`
`SAMTOOLS_STATS`	`samtools`	`1.16.1`
`SPADES`	`spades`	`3.15.5`
`TABIX_TABIX`	`tabix`	`1.12`
`UNTAR_KRAKEN2_DB`	`untar`	`1.30`
`Workflow`	`Nextflow`	`23.10.0`
	`nf-core/viralrecon`	`2.6.0`

nf-core/viralrecon Workflow Summary

- this information is collected when the pipeline is started.

Core Nextflow options

revision: 2.6.0
runName: hungry_maxwell
containerEngine: singularity
launchDir: /carc/scratch/projects/ddomman2016191/Ark_RSV
workDir: /carc/scratch/projects/ddomman2016191/Ark_RSV/work
projectDir: /users/ddomman/.nextflow/assets/nf-core/viralrecon
userName: ddomman
profile: singularity
configFiles: /users/ddomman/.nextflow/assets/nf-core/viralrecon/nextflow.config, /carc/scratch/projects/ddomman2016191/Ark_RSV/nextflow.config, /carc/scratch/projects/ddomman2016191/Ark_RSV/nextflow.config

Input/output options

input: samplesheet.csv
platform: illumina
protocol: amplicon
outdir: RSVA

Reference genome options

fasta: reference_genomes/RSV_A_OP890336.1.fasta
primer_bed: IDT_RSV_A.bed
primer_left_suffix: _FOR
primer_right_suffix: _REV

Nanopore/Illumina options

skip_pangolin: true
skip_nextclade: true
skip_asciigenome: true

Illumina variant calling options

skip_consensus_plots: true

Illumina de novo assembly options

skip_blast: true
skip_abacas: true

Max job request options

max_cpus: 4
max_memory: 30.GB

Toggle navigation v1.14

MultiQC Toolbox

Apply Highlight Samples

Apply Rename Samples

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Tool Citations

About MultiQC

WARNING: Fail Alignment Check

Samples failed mapped read threshold: Columns

Variant calling metrics

Variant calling metrics: Columns

De novo assembly metrics

De novo assembly metrics: Columns

Amplicon coverage heatmap

PREPROCESS: FastQC (raw reads)

Sequence Counts Help

Sequence Quality Histograms Help

Per Sequence Quality Scores Help

Per Base Sequence Content Help

Rollover for sample name

Per Sequence GC Content Help

Per Base N Content Help

Sequence Length Distribution

Sequence Duplication Levels Help

Overrepresented sequences Help

Adapter Content Help

Status Checks Help

PREPROCESS: fastp (adapter trimming)

Filtered Reads

Insert Sizes

Sequence Quality

GC Content

N content

PREPROCESS: Kraken 2

Top taxa Help

VARIANTS: Bowtie 2

Paired-end alignments Help

VARIANTS: SAMTools (raw)

Samtools Flagstat

VARIANTS: SAMTools (iVar)

Samtools Flagstat

VARIANTS: mosdepth

Cumulative coverage distribution Help

Coverage distribution Help

Average coverage per contig

VARIANTS: Total variants (iVar)

VARIANTS: BCFTools

Variant Substitution Types

Variant Quality

Indel Distribution

Variant depths

ASSEMBLY: Cutadapt (primer trimming)

Filtered Reads

ASSEMBLY: QUAST (SPAdes)

Assembly Statistics

Quast Table: Columns

Number of Contigs

nf-core/viralrecon Software Versions

nf-core/viralrecon Workflow Summary

v1.14

Highlight Samples

Rename Samples

Show / Hide Samples

Sequence Counts

Sequence Quality Histograms

Per Sequence Quality Scores

Per Base Sequence Content

Per Sequence GC Content

Per Base N Content

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Status Checks

Top taxa

Paired-end alignments

Cumulative coverage distribution

Coverage distribution